Genomic Insights of Emerging Multidrug-Resistant OXA-48-Producing ST135 Proteus mirabilis

<b>Background/Objectives</b>: Among <i>Enterobacterales</i>, OXA-48-like-producing <i>Proteus mirabilis</i> strains have been scarcely detected. Herein, we characterized a <i>bla</i><sub>OXA-48</sub>-harbouring <i>P. mirabilis</i> strain recovered from Greece (Pm GR-1), while phylogenomics and comparative genomics analyses with previously published <i>bla</i><sub>OXA-48</sub> carriers were also assessed. <b>Methods</b>: Characterization of Pm GR-1 was performed by the Vitek<sup>®</sup> Compact and Mass Spectrometry systems, antimicrobial susceptibility testing, detection of beta-lactamases, multilocus-sequence typing (MLST), and whole-genome sequencing (WGS). In silico prediction of mobile genetic elements (MGEs), genomic islands (GIs), antimicrobial resistance genes (ARGs) and virulence factors (VFs), and phylogenetic, core-genome SNP and comparative genomics analyses were executed using bioinformatic tools. <b>Results</b>: Pm GR-1 was isolated from a urine sample of an outpatient in a Greek hospital. It exhibited a multidrug-resistant phenotype, being susceptible only to amikacin and ceftazidime/avibactam. It co-carried several beta-lactamase genes on the chromosome (<i>bla</i><sub>OXA-48</sub>, <i>bla</i><sub>CTX-M-14</sub>, <i>bla</i><sub>TEM-1</sub>) and a plasmid <i>(bla</i><sub>TEM-2</sub>) and several other ARGs, but also mutations associated with quinolone resistance in the DNA gyrase and topoisomerase IV subunits. It belonged to the international clone ST135 that has also been detected among OXA-48-producing <i>P. mirabilis</i> strains from Germany and the USA. Pm GR-1 was genetically related to those from Germany, sharing highly similar MGEs, GIs, ARGs and VFs, including the chromosomal <i>bla</i><sub>OXA-48</sub> genetic structure, the O-antigen locus, the flagella locus, the MR/P fimbriae operon, and the urease gene cluster. <b>Conclusions</b>: To our knowledge, this is the first report from Greece of a <i>bla</i><sub>OXA-48</sub>-possessing <i>P. mirabilis</i> strain. The emergence of <i>bla</i><sub>OXA-48</sub> among <i>P. mirabilis</i> strains of the international clone ST135 in different geographical regions is worrying. Close monitoring of these strains is required in One Health settings.

Authors

Institutions

Publication Details

Journal
Antibiotics
Published
2025-07-25
DOI
https://doi.org/10.3390/antibiotics14080750
Citations
1
Primary Topic
Antibiotic Resistance in Bacteria
Type
article
Field-Weighted Citation Impact
0.59
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Genomic Insights of Emerging Multidrug-Resistant OXA-48-Producing ST135 Proteus mirabilis

Athanasios Tsakris, Nick Spanakis, Vasiliki Koumaki, Aikaterini Michelaki et al.
1 citations
Antibiotics
Antibiotic Resistance in Bacteria
0.59
article

Genomic Insights of Emerging Multidrug-Resistant OXA-48-Producing ST135 Proteus mirabilis

Athanasios Tsakris, Nick Spanakis, Vasiliki Koumaki, Aikaterini Michelaki, Maria Orfanidou, Elisavet Froukala, Angeliki Mavroidi
article en
1 citations

Abstract

<b>Background/Objectives</b>: Among <i>Enterobacterales</i>, OXA-48-like-producing <i>Proteus mirabilis</i> strains have been scarcely detected. Herein, we characterized a <i>bla</i><sub>OXA-48</sub>-harbouring <i>P. mirabilis</i> strain recovered from Greece (Pm GR-1), while phylogenomics and comparative genomics analyses with previously published <i>bla</i><sub>OXA-48</sub> carriers were also assessed. <b>Methods</b>: Characterization of Pm GR-1 was performed by the Vitek<sup>®</sup> Compact and Mass Spectrometry systems, antimicrobial susceptibility testing, detection of beta-lactamases, multilocus-sequence typing (MLST), and whole-genome sequencing (WGS). In silico prediction of mobile genetic elements (MGEs), genomic islands (GIs), antimicrobial resistance genes (ARGs) and virulence factors (VFs), and phylogenetic, core-genome SNP and comparative genomics analyses were executed using bioinformatic tools. <b>Results</b>: Pm GR-1 was isolated from a urine sample of an outpatient in a Greek hospital. It exhibited a multidrug-resistant phenotype, being susceptible only to amikacin and ceftazidime/avibactam. It co-carried several beta-lactamase genes on the chromosome (<i>bla</i><sub>OXA-48</sub>, <i>bla</i><sub>CTX-M-14</sub>, <i>bla</i><sub>TEM-1</sub>) and a plasmid <i>(bla</i><sub>TEM-2</sub>) and several other ARGs, but also mutations associated with quinolone resistance in the DNA gyrase and topoisomerase IV subunits. It belonged to the international clone ST135 that has also been detected among OXA-48-producing <i>P. mirabilis</i> strains from Germany and the USA. Pm GR-1 was genetically related to those from Germany, sharing highly similar MGEs, GIs, ARGs and VFs, including the chromosomal <i>bla</i><sub>OXA-48</sub> genetic structure, the O-antigen locus, the flagella locus, the MR/P fimbriae operon, and the urease gene cluster. <b>Conclusions</b>: To our knowledge, this is the first report from Greece of a <i>bla</i><sub>OXA-48</sub>-possessing <i>P. mirabilis</i> strain. The emergence of <i>bla</i><sub>OXA-48</sub> among <i>P. mirabilis</i> strains of the international clone ST135 in different geographical regions is worrying. Close monitoring of these strains is required in One Health settings.

AntibioticsVol. 14(8)
National and Kapodistrian University of Athens (GR), General University Hospital of Patras (GR), General Hospital of Athens G. Genimatas (GR)
Openalex Percentile: Top 33%
Antibiotic Resistance in Bacteria
0.59
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.