Induction-free recombineering for simple targeted gene-deletions in various mycobacteria

Gene deletion is a valuable tool for phenotypic characterization in bacteriology, but in mycobacteria, generating deletion mutants remains a cumbersome and time-consuming process. Here, we present a modification to the widely used recombineering method in mycobacteria. By expressing the recombineering-promoting proteins from a single-copy episomal plasmid, we could use a constitutive promotor. This approach eliminates the need for induction prior to electroporation of the targeting substrate (linear DNA fragment comprised of homologous regions to the gene of interest, flanking a selection marker), and shortens the subsequent plasmid curing process. We successfully demonstrated this method in <i>Mycobacterium tuberculosis</i>, <i>M. marinum</i>, <i>and M. abscessus</i>.IMPORTANCEAlthough several techniques exist for generating gene-deletion mutants in mycobacteria, these procedures remain limited to laboratories more specialized in molecular biology. Here we present a very simplified procedure, which is a modification on a well-tried technique. Our proposed procedure makes genetic manipulation in mycobacteria more accessible to a greater number of researchers throughout the world, including those with less advanced molecular biology expertizse.

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Publication Details

Journal
Microbiology Spectrum
Published
2025-08-04
DOI
https://doi.org/10.1128/spectrum.01897-25
Primary Topic
Mycobacterium research and diagnosis
Type
article
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article

Induction-free recombineering for simple targeted gene-deletions in various mycobacteria

Daniel Barkan, Yahav Bracha
Microbiology Spectrum
Mycobacterium research and diagnosis
article

Induction-free recombineering for simple targeted gene-deletions in various mycobacteria

Daniel Barkan, Yahav Bracha
article en

Abstract

Gene deletion is a valuable tool for phenotypic characterization in bacteriology, but in mycobacteria, generating deletion mutants remains a cumbersome and time-consuming process. Here, we present a modification to the widely used recombineering method in mycobacteria. By expressing the recombineering-promoting proteins from a single-copy episomal plasmid, we could use a constitutive promotor. This approach eliminates the need for induction prior to electroporation of the targeting substrate (linear DNA fragment comprised of homologous regions to the gene of interest, flanking a selection marker), and shortens the subsequent plasmid curing process. We successfully demonstrated this method in <i>Mycobacterium tuberculosis</i>, <i>M. marinum</i>, <i>and M. abscessus</i>.IMPORTANCEAlthough several techniques exist for generating gene-deletion mutants in mycobacteria, these procedures remain limited to laboratories more specialized in molecular biology. Here we present a very simplified procedure, which is a modification on a well-tried technique. Our proposed procedure makes genetic manipulation in mycobacteria more accessible to a greater number of researchers throughout the world, including those with less advanced molecular biology expertizse.

Microbiology SpectrumVol. 13(9)
Hebrew University of Jerusalem (IL), Smith Institute (GB)
Openalex Percentile: Top 73%
Mycobacterium research and diagnosis
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Induction-free recombineering for simple targeted gene-deletions in various mycobacteria — Daniel Barkan, Yahav Bracha · Microbiology Spectrum (2025) | TGRS Research Map | TGRS