UTSamuel at ArchEHR-QA 2025: A Clinical Question Answering System for Responding to Patient Portal Messages Using Generative AI

Responding to patient portal messages places a substantial burden on clinicians.To mitigate this, automatically generating answers to patient questions by considering their medical records is a critical solution.In this study, we proposed a clinical question answering system for the BioNLP 2025 Shared Task on Grounded Electronic Health Record Question Answering.The system processed each patient message case by selecting relevant sentences as evidences from the associated clinical notes and generating a concise, medically accurate answer to the patient's question.A generative AI model from OpenAI (GPT-4o) was leveraged to assist with sentence selection and answer generation.Each response is grounded in source text, limited to 75 words, and includes sentence-level citations.The system was evaluated on 100 test cases using alignment, citation, and summarization metrics.Our results indicate the significant potential of the clinical question answering system based on generative AI models to streamline communication between patients and healthcare providers by automatically generating responses to patient messages.

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Publication Details

Published
2025-01-01
DOI
https://doi.org/10.18653/v1/2025.bionlp-share.11
Primary Topic
Topic Modeling
Type
article
Field-Weighted Citation Impact
0.00

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UTSamuel at ArchEHR-QA 2025: A Clinical Question Answering System for Responding to Patient Portal Messages Using Generative AI

Ming Huang, Liwei Wang, Hongfang Liu, Samuel Reason
Topic Modeling
article

UTSamuel at ArchEHR-QA 2025: A Clinical Question Answering System for Responding to Patient Portal Messages Using Generative AI

Ming Huang, Liwei Wang, Hongfang Liu, Samuel Reason
article en

Abstract

Responding to patient portal messages places a substantial burden on clinicians.To mitigate this, automatically generating answers to patient questions by considering their medical records is a critical solution.In this study, we proposed a clinical question answering system for the BioNLP 2025 Shared Task on Grounded Electronic Health Record Question Answering.The system processed each patient message case by selecting relevant sentences as evidences from the associated clinical notes and generating a concise, medically accurate answer to the patient's question.A generative AI model from OpenAI (GPT-4o) was leveraged to assist with sentence selection and answer generation.Each response is grounded in source text, limited to 75 words, and includes sentence-level citations.The system was evaluated on 100 test cases using alignment, citation, and summarization metrics.Our results indicate the significant potential of the clinical question answering system based on generative AI models to streamline communication between patients and healthcare providers by automatically generating responses to patient messages.

Cancer Prevention and Research Institute of Texas, National Institutes of Health, U.S. National Library of Medicine
Openalex Percentile: Top 90%
Topic Modeling
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UTSamuel at ArchEHR-QA 2025: A Clinical Question Answering System for Responding to Patient Portal Messages Using Generative AI — Ming Huang, Liwei Wang, et al. · (2025) | TGRS Research Map | TGRS