Leveraging Environmental DNA Meta barcoding to Explore Agro-biodiversity, Microbial Dynamics and the Impact of Plant Extracts on Pest Management in Agricultural Ecosystems

Sustainable pest management is vital for promoting agricultural productivity while preserving environmental health. This study investigated the integration of plant-based pest control methods with environmental DNA (eDNA) metabarcoding to develop eco-friendly pest management strategy. Soil, plant, and air samples were collected from organic, agroecological, and conventional farms across Bangladesh. These samples were used to analyze the microbial and pest diversity. Plant extracts from neem (Azadirachta indica), garlic (Allium sativum), and tobacco (Nicotiana tabacum) were prepared and tested against Helicoverpa armigera under greenhouse conditions at concentrations of 10%, 25%, and 50%. eDNA metabarcoding results revealed that organic farms exhibited the highest microbial diversity (Shannon index = 3.87), while conventional farms recorded the highest pest species diversity (species richness = 27). Pest mortality rates varied by concentration, with neem extract at 50% concentration achieving the highest mortality rate (91.3%), followed by garlic (85.7%) and tobacco (78.5%). Statistical analysis using One-way ANOVA and Tukey’s post-hoc test confirmed significant differences (p < 0.05) between treatments and controls. The findings demonstrate that integrating eDNA-based biodiversity monitoring with plant-derived pesticides offers an effective and sustainable approach to pest management.