Chromosome-level genome assembly of bivalve mollusk, Xishishe Coelomactra antiquata

Coelomactra antiquata, a significant marine economic shellfish in China, is experiencing a natural population decline due to habitat destruction and overfishing, making the restoration and conservation of its natural resources an urgent priority. This study provides a high - quality chromosome - level genome assembly for C. antiquata, created by PacBio and Hi - C sequencing and resulting in a 19 - chromosome map. The assembly encompasses a genome size of 807.31 Mb, with a contig N50 of 17.35 Mb and a scaffold N50 of 42.90 Mb. A total of 28,070 protein - coding genes were identified, 25,959 of which were functionally annotated. Overall, this study offers a chromosome - level genome for C. antiquata that is highly continuous and complete, providing an indispensable resource for subsequent molecular and genetic studies of this species.

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Publication Details

Journal
Scientific Data
Published
2025-07-26
DOI
https://doi.org/10.1038/s41597-025-05661-x
Primary Topic
Aquatic Invertebrate Ecology and Behavior
Type
article
Field-Weighted Citation Impact
0.00

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article

Chromosome-level genome assembly of bivalve mollusk, Xishishe Coelomactra antiquata

Xi Xie, Hualin Li, Yongxin Sun, Yongan Bai et al.
Scientific Data
Aquatic Invertebrate Ecology and Behavior
article

Chromosome-level genome assembly of bivalve mollusk, Xishishe Coelomactra antiquata

Xi Xie, Hualin Li, Yongxin Sun, Yongan Bai, Dacheng Li, Zunchun Zhou, Shuo Wang, Weiming Teng, Qingzhi Wang, Xiangfeng Liu, Zuoan Yu
article en

Abstract

Coelomactra antiquata, a significant marine economic shellfish in China, is experiencing a natural population decline due to habitat destruction and overfishing, making the restoration and conservation of its natural resources an urgent priority. This study provides a high - quality chromosome - level genome assembly for C. antiquata, created by PacBio and Hi - C sequencing and resulting in a 19 - chromosome map. The assembly encompasses a genome size of 807.31 Mb, with a contig N50 of 17.35 Mb and a scaffold N50 of 42.90 Mb. A total of 28,070 protein - coding genes were identified, 25,959 of which were functionally annotated. Overall, this study offers a chromosome - level genome for C. antiquata that is highly continuous and complete, providing an indispensable resource for subsequent molecular and genetic studies of this species.

Scientific DataVol. 12(1)
Dalian Ocean University (CN), Queen Mary University of London (GB), Ministry of Agriculture and Rural Affairs (CN), Liaoning Ocean and Fisheries Research Institute (CN), Pingjin Hospital (CN)
China Scholarship Council, Liaoning Academy of Agricultural Sciences, National Key Research and Development Program of China
Life below water
Openalex Percentile: Top 82%
Aquatic Invertebrate Ecology and Behavior
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