A reference genome assembly for the pink volcano barnacle, <i>Tetraclita rubescens</i> , Nilsson-Cantell, 1931

The pink volcano barnacle, Tetraclita rubescens, has experienced a poleward range expansion along the eastern Pacific coastline amidst recent climate changes, likely facilitated by high gene flow and high genetic diversity in a large population. A high-quality reference genome provides the next step to investigate these patterns in more detail. We present a highly contiguous, chromosome-level genome assembly for T. rubescens using long-read sequencing and short-read proximity ligation data. The genome assembly is 2.44 Gb, contains 92.5% complete ortholog genes based on the known Arthropoda gene list, the largest N50 compared with other high-quality barnacle genomes (~107 Mb), and a low L50 score (10 scaffolds). With this chromosome-level assembly, we will be better able to contrast the roles of drift, migration, and selection in population and spatial expansion dynamics and the roles of dispersal and adaptation within the range and to investigate the genomic diversity of the species, including the roles of transposable elements in the genome. T. rubescens is an iconic barnacle on central and southern Californian rocky intertidal shores, and understanding its dynamics can help inform and support the conservation of intertidal communities along the northeastern Pacific coastline.

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Publication Details

Journal
Journal of Heredity
Published
2025-07-20
DOI
https://doi.org/10.1093/jhered/esaf052
Primary Topic
Marine and coastal plant biology
Type
article
Field-Weighted Citation Impact
0.00

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article

A reference genome assembly for the pink volcano barnacle, Tetraclita rubescens , Nilsson-Cantell, 1931

Mohan P A Marimuthu, Melissa B. DeBiasse, Carmen del R. Pedraza-Marrón, William Seligmann et al.
Journal of Heredity
Marine and coastal plant biology
article

A reference genome assembly for the pink volcano barnacle, Tetraclita rubescens , Nilsson-Cantell, 1931

Mohan P A Marimuthu, Melissa B. DeBiasse, Carmen del R. Pedraza-Marrón, William Seligmann, Bailey J. Carlson, Noravit Chumchim, Michael N Dawson, Oanh Nguyen, Merly Escalona, Courtney Miller
article en

Abstract

The pink volcano barnacle, Tetraclita rubescens, has experienced a poleward range expansion along the eastern Pacific coastline amidst recent climate changes, likely facilitated by high gene flow and high genetic diversity in a large population. A high-quality reference genome provides the next step to investigate these patterns in more detail. We present a highly contiguous, chromosome-level genome assembly for T. rubescens using long-read sequencing and short-read proximity ligation data. The genome assembly is 2.44 Gb, contains 92.5% complete ortholog genes based on the known Arthropoda gene list, the largest N50 compared with other high-quality barnacle genomes (~107 Mb), and a low L50 score (10 scaffolds). With this chromosome-level assembly, we will be better able to contrast the roles of drift, migration, and selection in population and spatial expansion dynamics and the roles of dispersal and adaptation within the range and to investigate the genomic diversity of the species, including the roles of transposable elements in the genome. T. rubescens is an iconic barnacle on central and southern Californian rocky intertidal shores, and understanding its dynamics can help inform and support the conservation of intertidal communities along the northeastern Pacific coastline.

Journal of HeredityVol. 117(1)
University of California, Merced (US), University of California, Los Angeles (US), University of California, Santa Cruz (US), Radford University (US), University of California, Davis (US)
National Science Foundation, University of California, Santa Cruz, California Department of Parks and Recreation, National Institutes of Health, California Department of Fish and Wildlife, University of California, Davis, University of California, San Francisco, Genome Center, University of California, Davis
Life below water
Openalex Percentile: Top 81%
Marine and coastal plant biology
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