Identified <i>Neptunicella plasticusilytica</i> sp. nov. and its novel PET-degrading enzyme derived from mangrove plastic debris

Mangrove ecosystems are critical for coastal protection and biodiversity but are increasingly threatened by plastic pollution, particularly polyethylene terephthalate (PET). In this study, a novel marine bacterium, strain SCSIO 80796<sup>T</sup>, was isolated from PET debris collected from the mangrove in QiAo Island, Zhuhai, China. Using a polyphasic taxonomic approach, including 16S rRNA gene sequencing, genome-based comparisons (average nucleotide identity [ANI] 72.2%, digital DNA-DNA hybridization [dDDH] 19.0%, average amino acid identity [AAI] 70.6%), and phenotypic and chemotaxonomic analyses, the strain was classified as a novel species within the genus <i>Neptunicella</i>. It is proposed as <i>Neptunicella plasticusilytica</i> sp. nov. (type strain SCSIO 80796ᵀ = MCCC 1K08369<sup>T</sup> = KCTC 92826<sup>T</sup>). Genomic analysis revealed that strain SCSIO 80796ᵀ encodes a novel PET-degrading enzyme, <i>Nm</i>Cut, which degrades PET and yields 105-120 µM of degradation products [terephthalic acid (TPA), mono(2-hydroxyethyl) terephthalate (MHET), bis(2-hydroxyethyl) terephthalate (BHET)] within 48 h at 60°C. <i>Nm</i>Cut exhibits both structural and evolutionary novelty, featuring a unique PET-binding module (PBM) absent in known PETases. PBM is characterized by a long, positively charged α-helix enriched in aromatic residues, forming a distinct substrate-interacting surface with potential as a transferable domain to enhance the efficiency of other plastic-degrading enzymes. This study not only expands the known diversity within <i>Neptunicella</i> but also highlights the potential of marine-derived microbes in addressing plastic pollution through biotechnological applications.IMPORTANCEThe discovery of <i>Neptunicella plasticusilytica</i> sp. nov. advances marine microbial ecology by revealing a novel species in the scarcely studied genus <i>Neptunicella</i>, which previously contained only one cultured representative. Isolated from plastic-polluted mangroves, this bacterium exemplifies microbial adaptation to anthropogenic habitats. Its functional uniqueness is underscored by a phylogenetically distinct polyethylene terephthalate (PET)-degrading enzyme (<i>Nm</i>Cut), forming an evolutionary clade separate from all known plastic-degrading enzymes. By integrating taxonomic discovery with functional genomics, this study bridges the gap between microbial diversity and biotechnological potential. The dual novelty of <i>N. plasticusilytica</i>-as a taxonomic addition and a source of evolutionarily unique enzymes-highlights the importance of exploring understudied environments to address global challenges like plastic pollution.

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Journal
Applied and Environmental Microbiology
Published
2025-07-24
DOI
https://doi.org/10.1128/aem.01136-25
Primary Topic
Microplastics and Plastic Pollution
Type
article
Field-Weighted Citation Impact
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article

Identified Neptunicella plasticusilytica sp. nov. and its novel PET-degrading enzyme derived from mangrove plastic debris

Songbiao Shi, Xinpeng Tian, Linni Jian, Qiaoqiao Guo et al.
Applied and Environmental Microbiology
Microplastics and Plastic Pollution
article

Identified Neptunicella plasticusilytica sp. nov. and its novel PET-degrading enzyme derived from mangrove plastic debris

Songbiao Shi, Xinpeng Tian, Linni Jian, Qiaoqiao Guo, Syed Raziuddin Quadri, Qi Zeng, Lijuan Long
article en

Abstract

Mangrove ecosystems are critical for coastal protection and biodiversity but are increasingly threatened by plastic pollution, particularly polyethylene terephthalate (PET). In this study, a novel marine bacterium, strain SCSIO 80796<sup>T</sup>, was isolated from PET debris collected from the mangrove in QiAo Island, Zhuhai, China. Using a polyphasic taxonomic approach, including 16S rRNA gene sequencing, genome-based comparisons (average nucleotide identity [ANI] 72.2%, digital DNA-DNA hybridization [dDDH] 19.0%, average amino acid identity [AAI] 70.6%), and phenotypic and chemotaxonomic analyses, the strain was classified as a novel species within the genus <i>Neptunicella</i>. It is proposed as <i>Neptunicella plasticusilytica</i> sp. nov. (type strain SCSIO 80796ᵀ = MCCC 1K08369<sup>T</sup> = KCTC 92826<sup>T</sup>). Genomic analysis revealed that strain SCSIO 80796ᵀ encodes a novel PET-degrading enzyme, <i>Nm</i>Cut, which degrades PET and yields 105-120 µM of degradation products [terephthalic acid (TPA), mono(2-hydroxyethyl) terephthalate (MHET), bis(2-hydroxyethyl) terephthalate (BHET)] within 48 h at 60°C. <i>Nm</i>Cut exhibits both structural and evolutionary novelty, featuring a unique PET-binding module (PBM) absent in known PETases. PBM is characterized by a long, positively charged α-helix enriched in aromatic residues, forming a distinct substrate-interacting surface with potential as a transferable domain to enhance the efficiency of other plastic-degrading enzymes. This study not only expands the known diversity within <i>Neptunicella</i> but also highlights the potential of marine-derived microbes in addressing plastic pollution through biotechnological applications.IMPORTANCEThe discovery of <i>Neptunicella plasticusilytica</i> sp. nov. advances marine microbial ecology by revealing a novel species in the scarcely studied genus <i>Neptunicella</i>, which previously contained only one cultured representative. Isolated from plastic-polluted mangroves, this bacterium exemplifies microbial adaptation to anthropogenic habitats. Its functional uniqueness is underscored by a phylogenetically distinct polyethylene terephthalate (PET)-degrading enzyme (<i>Nm</i>Cut), forming an evolutionary clade separate from all known plastic-degrading enzymes. By integrating taxonomic discovery with functional genomics, this study bridges the gap between microbial diversity and biotechnological potential. The dual novelty of <i>N. plasticusilytica</i>-as a taxonomic addition and a source of evolutionarily unique enzymes-highlights the importance of exploring understudied environments to address global challenges like plastic pollution.

Applied and Environmental MicrobiologyVol. 91(8)
Northern Border University (SA), Chinese Academy of Sciences (CN), Institute of Oceanology (CN), South China Sea Institute Of Oceanology (CN), University of Chinese Academy of Sciences (CN)
National Key Research and Development Program of China
Life below water
Openalex Percentile: Top 87%
Microplastics and Plastic Pollution
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