Large‐Scale Calculations by Integrating the Fragmentation Approach With Neural Network Potentials

A fragmentation method is introduced to enable large-scale molecular simulations using neural network potentials (NNPs). The method partitions a system into cube-shaped fragments and reconstructs the total energy using a many-body expansion formalism with a distance-based cut-off approximation. Validation with Au, NaCl, diamond, H<sub>2</sub>O, and graphite crystals demonstrated that including three-body interactions with 26 neighboring fragments reduces per-atom energy error to within 0.04 eV. This approach enables simulations of systems with up to 1 million atoms, surpassing conventional NNP limits. The scaling exponent for three-body calculations remains below 1.64, suggesting feasibility for even larger-scale applications.

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Publication Details

Journal
Journal of Computational Chemistry
Published
2025-07-24
DOI
https://doi.org/10.1002/jcc.70193
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00

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article

Large‐Scale Calculations by Integrating the Fragmentation Approach With Neural Network Potentials

Hiromi Nakai, Yuya Nakajima, Mikito Fujinami, Rei Oshima
Journal of Computational Chemistry
Machine Learning in Materials Science
article

Large‐Scale Calculations by Integrating the Fragmentation Approach With Neural Network Potentials

Hiromi Nakai, Yuya Nakajima, Mikito Fujinami, Rei Oshima
article en

Abstract

A fragmentation method is introduced to enable large-scale molecular simulations using neural network potentials (NNPs). The method partitions a system into cube-shaped fragments and reconstructs the total energy using a many-body expansion formalism with a distance-based cut-off approximation. Validation with Au, NaCl, diamond, H<sub>2</sub>O, and graphite crystals demonstrated that including three-body interactions with 26 neighboring fragments reduces per-atom energy error to within 0.04 eV. This approach enables simulations of systems with up to 1 million atoms, surpassing conventional NNP limits. The scaling exponent for three-body calculations remains below 1.64, suggesting feasibility for even larger-scale applications.

Journal of Computational ChemistryVol. 46(20)
Waseda University (JP), JGC (Japan) (JP)
Ministry of Education, Culture, Sports, Science and Technology, Japan Science and Technology Agency
Affordable and clean energy
Openalex Percentile: Top 87%
Machine Learning in Materials Science
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