De novo design and structure of a peptide–centric TCR mimic binding module
T cell receptor (TCR) mimics offer a promising platform for tumor-specific targeting of peptide-major histocompatibility complex (pMHC) in cancer immunotherapy. In this study, we designed a de novo α-helical TCR mimic (TCRm) specific for the NY-ESO-1 peptide presented by human leukocyte antigen (HLA)-A*02, achieving high on-target specificity with nanomolar affinity (dissociation constant <i>K</i><sub>d</sub> = 9.5 nM). The structure of the TCRm-pMHC complex at 2.05-Å resolution revealed a rigid TCR-like docking mode with an unusual degree of focus on the up-facing NY-ESO-1 side chains, suggesting the potential for reduced off-target reactivity. Indeed, a structure-informed in silico screen of 14,363 HLA-A*02 peptides correctly predicted two off-target peptides, yet our TCRm maintained peptide selectivity and cytotoxicity as a T cell engager. These results represent a path for precision targeting of tumor antigens with peptide-focused α-helical TCR mimics.
Authors
- Kevin M. Jude (ORCID: https://orcid.org/0000-0002-3675-5136)
- Matthias Obenaus (ORCID: https://orcid.org/0000-0002-5090-9162)
- Karsten D. Householder (ORCID: https://orcid.org/0000-0003-0282-4479)
- Arthur Deng
- Xinyu Xiang (ORCID: https://orcid.org/0000-0002-8358-2960)
- K. Christopher García (ORCID: https://orcid.org/0000-0001-9273-0278)
- Steven C. Wilson (ORCID: https://orcid.org/0000-0002-7382-3388)
- Nan Wang (ORCID: https://orcid.org/0000-0001-6840-5336)
- Yang Zhao (ORCID: https://orcid.org/0000-0002-6596-499X)
- Xiaojing Chen
Institutions
- Howard Hughes Medical Institute (US)
- Stanford University (US)
Publication Details
- Journal
- Science
- Published
- 2025-07-24
- DOI
- https://doi.org/10.1126/science.adv3813
- Citations
- 12
- Primary Topic
- Immunotherapy and Immune Responses
- Type
- article
- Field-Weighted Citation Impact
- 9.57