AI-driven prediction of mRNA vaccine degradation rates with dropout-enhanced hyperparameter optimisation

Rapid mRNA vaccine degradation necessitates accurate prediction to ensure efficacy and mitigate risks. Despite challenges, mRNA vaccines' affordability, high efficacy, and minimal side effects justify intensive research efforts. Multifaceted data analysis enhances prediction efficiency. This study leverages bioinformatics with label-encoding of tetra-nitrogenous bases (4-ntb-lbA) and advanced models, refined through extensive review. Hyperparameter optimisation is improved with the dropout-enhanced technique (DEet), addressing traditional shortcomings - frequently suggesting suboptimal configurations. Results demonstrate that 4-ntb-lbA and DEet offer practical solutions. Specifically, 4-ntb-lbA upholds interdisciplinarity and minimises overfitting, while DEet mitigates suboptimality and accelerates convergence. These improvements are notable in the three-layered-wrapped-stacked BiLSTM (3lw-BiLSTM) model with 0.125-DEet to Bayesian optimisation with Gaussian process (BOGP) on a medium-sized subset (MSbT) at epoch 150, where training and validation losses reached 0.0015 and 0.0018, respectively, significantly reducing computational costs. This interdisciplinary approach is valuable for biotechnology and biomedicine, underscoring its contribution to efficient data analysis.

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Publication Details

Journal
International Journal of Biomedical Engineering and Technology
Published
2025-01-01
DOI
https://doi.org/10.1504/ijbet.2025.147078
Primary Topic
Protein purification and stability
Type
article
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article

AI-driven prediction of mRNA vaccine degradation rates with dropout-enhanced hyperparameter optimisation

Hiromitsu Nishizaki, ‪Mohd Yusoff Mashor, Zeehaida Mohamed, Azian Azamimi Abdullah et al.
International Journal of Biomedical Engineering and Technology
Protein purification and stability
article

AI-driven prediction of mRNA vaccine degradation rates with dropout-enhanced hyperparameter optimisation

Hiromitsu Nishizaki, ‪Mohd Yusoff Mashor, Zeehaida Mohamed, Azian Azamimi Abdullah, Wei Chern Ang, Latifah Munirah Kamarudin, Hwai Ing Soon
article en

Abstract

Rapid mRNA vaccine degradation necessitates accurate prediction to ensure efficacy and mitigate risks. Despite challenges, mRNA vaccines' affordability, high efficacy, and minimal side effects justify intensive research efforts. Multifaceted data analysis enhances prediction efficiency. This study leverages bioinformatics with label-encoding of tetra-nitrogenous bases (4-ntb-lbA) and advanced models, refined through extensive review. Hyperparameter optimisation is improved with the dropout-enhanced technique (DEet), addressing traditional shortcomings - frequently suggesting suboptimal configurations. Results demonstrate that 4-ntb-lbA and DEet offer practical solutions. Specifically, 4-ntb-lbA upholds interdisciplinarity and minimises overfitting, while DEet mitigates suboptimality and accelerates convergence. These improvements are notable in the three-layered-wrapped-stacked BiLSTM (3lw-BiLSTM) model with 0.125-DEet to Bayesian optimisation with Gaussian process (BOGP) on a medium-sized subset (MSbT) at epoch 150, where training and validation losses reached 0.0015 and 0.0018, respectively, significantly reducing computational costs. This interdisciplinary approach is valuable for biotechnology and biomedicine, underscoring its contribution to efficient data analysis.

International Journal of Biomedical Engineering and TechnologyVol. 48(2)
Ministry of Health (MY), Universiti Sains Malaysia (MY), Universiti Malaysia Perlis (MY), University of Yamanashi (JP)
Zero hunger
Openalex Percentile: Top 84%
Protein purification and stability
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AI-driven prediction of mRNA vaccine degradation rates with dropout-enhanced hyperparameter optimisation — Hiromitsu Nishizaki, ‪Mohd Yusoff Mashor, et al. · International Journal of Biomedical Engineering and Technology (2025) | TGRS Research Map | TGRS