Interpreting ML in Ecology: A RAG-Based Approach to Explainability in Species Distribution Modeling

Species Distribution Modeling (SDM) relies increasingly on Machine Learning (ML), but many models remain opaque, limiting their usability for non-experts. While SHAP and LIME improve interpretability, they still require technical expertise. This study proposes an agentic Retrieval-Augmented Generation (RAG) framework, integrating ML models (Logistic Regression, Random Forests, MLP), XAI techniques (SHAP, LIME), and a LLM-powered explanation system to enhance explainability. Using GoAmazon 2014/15 environmental data and GBIF species occurrences, we evaluated explanations based on completeness, and context-awareness, achieving a significant improvement in this study case. Results indicate that LLMs combined with XAI can significantly enhance explainability in SDM.

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Published
2025-07-20
DOI
https://doi.org/10.5753/wcama.2025.8219
Primary Topic
Species Distribution and Climate Change
Type
article
Field-Weighted Citation Impact
0.00

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article

Interpreting ML in Ecology: A RAG-Based Approach to Explainability in Species Distribution Modeling

Pedro Luiz Pizzigatti Corrêa, Renato O. Miyaji
Species Distribution and Climate Change
article

Interpreting ML in Ecology: A RAG-Based Approach to Explainability in Species Distribution Modeling

Pedro Luiz Pizzigatti Corrêa, Renato O. Miyaji
article en

Abstract

Species Distribution Modeling (SDM) relies increasingly on Machine Learning (ML), but many models remain opaque, limiting their usability for non-experts. While SHAP and LIME improve interpretability, they still require technical expertise. This study proposes an agentic Retrieval-Augmented Generation (RAG) framework, integrating ML models (Logistic Regression, Random Forests, MLP), XAI techniques (SHAP, LIME), and a LLM-powered explanation system to enhance explainability. Using GoAmazon 2014/15 environmental data and GBIF species occurrences, we evaluated explanations based on completeness, and context-awareness, achieving a significant improvement in this study case. Results indicate that LLMs combined with XAI can significantly enhance explainability in SDM.

Universidad San Pedro (PE)
Fundação de Amparo à Pesquisa do Estado de São Paulo, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
Openalex Percentile: Top 90%
Species Distribution and Climate Change
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Interpreting ML in Ecology: A RAG-Based Approach to Explainability in Species Distribution Modeling — Pedro Luiz Pizzigatti Corrêa, Renato O. Miyaji · (2025) | TGRS Research Map | TGRS