Semi‐Automated Pipeline for Transition State Search of Molecular Photoswitches

In this work, a semi‐automated pipeline for the transition state search of molecular switches (PiTS 3 ) is reported, which facilitates the search, optimization, and conformational analysis of transition states of user‐generated molecular structures. This tool is oriented towards the casual user interested in simulating the thermal properties of photochemical switches. Hence, the pipeline can easily read the commonly used .cdxml files as input, and leverages different established packages such as ORCA, xTB, CREST, and pysisyphus. Additional scripts are provided to combine different inputs to create libraries of compounds from chemical drawings, to explore large chemical spaces of photoswitches based on the stilbene, imine, aza‐diarylethene, and norbornadiene structures.

Authors

Institutions

Publication Details

Journal
ChemPhotoChem
Published
2025-07-21
DOI
https://doi.org/10.1002/cptc.202500126
Citations
1
Primary Topic
Photochromic and Fluorescence Chemistry
Type
article
Field-Weighted Citation Impact
0.52

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Semi‐Automated Pipeline for Transition State Search of Molecular Photoswitches

Jorn D. Steen, Stefano Crespi, Roman Yu. Peshkov
1 citations
ChemPhotoChem
Photochromic and Fluorescence Chemistry
0.52
article

Semi‐Automated Pipeline for Transition State Search of Molecular Photoswitches

Jorn D. Steen, Stefano Crespi, Roman Yu. Peshkov
article en
1 citations

Abstract

In this work, a semi‐automated pipeline for the transition state search of molecular switches (PiTS 3 ) is reported, which facilitates the search, optimization, and conformational analysis of transition states of user‐generated molecular structures. This tool is oriented towards the casual user interested in simulating the thermal properties of photochemical switches. Hence, the pipeline can easily read the commonly used .cdxml files as input, and leverages different established packages such as ORCA, xTB, CREST, and pysisyphus. Additional scripts are provided to combine different inputs to create libraries of compounds from chemical drawings, to explore large chemical spaces of photoswitches based on the stilbene, imine, aza‐diarylethene, and norbornadiene structures.

ChemPhotoChemVol. 9(10)
Uppsala University (SE)
Wenner-Gren Stiftelserna, Göran Gustafssons Stiftelser, National Science Council, Vetenskapsrådet, Stiftelsen Lars Hiertas Minne
Openalex Percentile: Top 36%
Photochromic and Fluorescence Chemistry
0.52
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Semi‐Automated Pipeline for Transition State Search of Molecular Photoswitches — Jorn D. Steen, Stefano Crespi, et al. · ChemPhotoChem (2025) | TGRS Research Map | TGRS