Prioritizing Chemical Candidates from Non-targeted Analysis Using Metadata, Spectral Similarity, and Hazard Scoring within INTERPRET NTA

New approach methodologies like non-targeted analysis (NTA) are increasingly relevant for identifying and monitoring emerging contaminants. Utilizing high-resolution mass spectrometry (HRMS), NTA methods can detect and annotate chemicals without prior knowledge. Yet, NTA results often have associated uncertainties owing, in part, to a lack of standardized methods. To address this challenge, the US Environmental Protection Agency (US EPA) developed the <b>Inter</b>face for <b>P</b>rocessing, <b>Re</b>viewing, and <b>T</b>ranslating <b>NTA</b> data ("INTERPRET NTA") to support NTA research within its Office of Research and Development (ORD). Previous work demonstrated INTERPRET NTA's capabilities for reviewing and reporting NTA data quality. The current work highlights additional functionalities for retrieving and interpreting chemical results. INTERPRET NTA accesses chemical data from multiple US EPA resources, including (1) chemical metadata from US EPA's Analytical Methods and Open Spectra (AMOS) database, (2) predicted spectra for ∼1.2 million chemical substances within US EPA's DSSTox database, and (3) hazard values from US EPA's Cheminformatics Hazard Module (CHM). <i>De facto</i> water reuse study data with 77 known chemicals were used to demonstrate INTERPRET NTA functions and capabilities. Known chemicals showed higher values for metadata, MS<sup>2</sup>, and hazard scores in 99.0%, 80.5%, and 92.0% of cases, respectively, compared to false positives. Interactive visualizations within INTERPRET NTA facilitate the visual integration of chemical results, highlighting chemical candidates of greatest interest, and allowing review of underlying data. INTERPRET NTA is being prepared for public release, offering researchers a tool for defensible and efficient review and reporting of NTA study results.

Authors

Institutions

Publication Details

Journal
Analytical Chemistry
Published
2025-07-16
DOI
https://doi.org/10.1021/acs.analchem.5c02223
Citations
1
Primary Topic
Advanced Chemical Sensor Technologies
Type
article
Field-Weighted Citation Impact
0.67

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Prioritizing Chemical Candidates from Non-targeted Analysis Using Metadata, Spectral Similarity, and Hazard Scoring within INTERPRET NTA

Rizwan Suliankatchi Abdulkader, Jeffrey M. Minucci, Angela L. Batt, Tommy Cathey et al.
1 citations
Analytical Chemistry
Advanced Chemical Sensor Technologies
0.67
article

Prioritizing Chemical Candidates from Non-targeted Analysis Using Metadata, Spectral Similarity, and Hazard Scoring within INTERPRET NTA

Rizwan Suliankatchi Abdulkader, Jeffrey M. Minucci, Angela L. Batt, Tommy Cathey, Shirley Pu, Jon R. Sobus, Laura D. Brunelle, Troy Ferland, Heather D. Whitehead, Alex Chao, E. Tyler Carr, Gregory Janesch, Antony Williams
article en
1 citations

Abstract

New approach methodologies like non-targeted analysis (NTA) are increasingly relevant for identifying and monitoring emerging contaminants. Utilizing high-resolution mass spectrometry (HRMS), NTA methods can detect and annotate chemicals without prior knowledge. Yet, NTA results often have associated uncertainties owing, in part, to a lack of standardized methods. To address this challenge, the US Environmental Protection Agency (US EPA) developed the <b>Inter</b>face for <b>P</b>rocessing, <b>Re</b>viewing, and <b>T</b>ranslating <b>NTA</b> data ("INTERPRET NTA") to support NTA research within its Office of Research and Development (ORD). Previous work demonstrated INTERPRET NTA's capabilities for reviewing and reporting NTA data quality. The current work highlights additional functionalities for retrieving and interpreting chemical results. INTERPRET NTA accesses chemical data from multiple US EPA resources, including (1) chemical metadata from US EPA's Analytical Methods and Open Spectra (AMOS) database, (2) predicted spectra for ∼1.2 million chemical substances within US EPA's DSSTox database, and (3) hazard values from US EPA's Cheminformatics Hazard Module (CHM). <i>De facto</i> water reuse study data with 77 known chemicals were used to demonstrate INTERPRET NTA functions and capabilities. Known chemicals showed higher values for metadata, MS<sup>2</sup>, and hazard scores in 99.0%, 80.5%, and 92.0% of cases, respectively, compared to false positives. Interactive visualizations within INTERPRET NTA facilitate the visual integration of chemical results, highlighting chemical candidates of greatest interest, and allowing review of underlying data. INTERPRET NTA is being prepared for public release, offering researchers a tool for defensible and efficient review and reporting of NTA study results.

Analytical ChemistryVol. 97(29)
Oak Ridge Associated Universities (US), Environmental Protection Agency (US), Ohio Environmental Protection Agency (US), Research Triangle Park Foundation (US), General Dynamics (United States) (US), Environmental Protection Agency (GH)
U.S. Environmental Protection Agency, Oak Ridge Institute for Science and Education
Openalex Percentile: Top 29%
Advanced Chemical Sensor Technologies
0.67
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.