Chromosome-level genome assembly of Elaeocarpus petiolatus (Elaeocarpaceae)

Elaeocarpus petiolatus is an ecologically and economically important species in tropical and subtropical forests. Despite its significance, the lack of genomic resources has hindered research on the genetic diversity and adaptive traits of E. petiolatus. To address this gap, we present a comprehensive chromosome-level genome assembly of E. petiolatus generated using advanced PacBio high-fidelity (HiFi) long-read sequencing and Hi-C technology. The assembly spans 322.45 Mb, with a scaffold N50 of 20.58 Mb, indicating that 37.11% of the genome is composed of repetitive elements. We identified 25,295 protein-coding genes, of which 96.74% were functionally annotated. This high-quality genome provides a critical resource for understanding the genetic mechanisms underlying environmental adaptability and biosynthesis of bioactive compounds in E. petiolatus, thereby supporting conservation efforts and sustainable forest management. The assembled genome and associated sequencing data are publicly available, facilitating further evolutionary and functional studies on the Elaeocarpaceae family.

Authors

Institutions

Publication Details

Journal
Scientific Data
Published
2025-07-16
DOI
https://doi.org/10.1038/s41597-025-05590-9
Primary Topic
Advances in Cucurbitaceae Research
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Chromosome-level genome assembly of Elaeocarpus petiolatus (Elaeocarpaceae)

Mingcheng Wang, Xi Huang, Lei Wang, Bingyang Liu
Scientific Data
Advances in Cucurbitaceae Research
article

Chromosome-level genome assembly of Elaeocarpus petiolatus (Elaeocarpaceae)

Mingcheng Wang, Xi Huang, Lei Wang, Bingyang Liu
article en

Abstract

Elaeocarpus petiolatus is an ecologically and economically important species in tropical and subtropical forests. Despite its significance, the lack of genomic resources has hindered research on the genetic diversity and adaptive traits of E. petiolatus. To address this gap, we present a comprehensive chromosome-level genome assembly of E. petiolatus generated using advanced PacBio high-fidelity (HiFi) long-read sequencing and Hi-C technology. The assembly spans 322.45 Mb, with a scaffold N50 of 20.58 Mb, indicating that 37.11% of the genome is composed of repetitive elements. We identified 25,295 protein-coding genes, of which 96.74% were functionally annotated. This high-quality genome provides a critical resource for understanding the genetic mechanisms underlying environmental adaptability and biosynthesis of bioactive compounds in E. petiolatus, thereby supporting conservation efforts and sustainable forest management. The assembled genome and associated sequencing data are publicly available, facilitating further evolutionary and functional studies on the Elaeocarpaceae family.

Scientific DataVol. 12(1)
Kunming Medical University (CN), Second Affiliated Hospital of Kunming Medical College (CN), Xishuangbanna Tropical Botanical Garden (CN), Chengdu University (CN)
Openalex Percentile: Top 80%
Advances in Cucurbitaceae Research
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Chromosome-level genome assembly of Elaeocarpus petiolatus (Elaeocarpaceae) — Mingcheng Wang, Xi Huang, et al. · Scientific Data (2025) | TGRS Research Map | TGRS