Predicting coarse-grained representations of biogeochemical cycles from metabarcoding data
The Tabigecy pipeline is available at https://github.com/ArnaudBelcour/tabigecy. The Python package bigecyhmm and the precomputed EsMeCaTa database are also separately available at https://github.com/ArnaudBelcour/bigecyhmm and https://doi.org/10.5281/zenodo.13354073, respectively.
Authors
- Sétareh Rad (ORCID: https://orcid.org/0000-0003-0703-7327)
- Petra Bombach
- Nicole Dopffel (ORCID: https://orcid.org/0000-0003-0020-9579)
- Caroline Michel (ORCID: https://orcid.org/0000-0002-0515-4637)
- Arnaud Belcour (ORCID: https://orcid.org/0000-0003-1170-0785)
- Hidde de Jong (ORCID: https://orcid.org/0000-0002-2226-650X)
- Delphine Ropers (ORCID: https://orcid.org/0000-0003-2659-3003)
- Sylvain Stéphant (ORCID: https://orcid.org/0000-0002-3213-2054)
- Loris Megy
Institutions
- Institut polytechnique de Grenoble (FR)
- United States Geological Survey (US)
- Centre National de la Recherche Scientifique (FR)
- Institut für Stahlbau Leipzig (Germany) (DE)
- Centre Inria de l'Université Grenoble Alpes (FR)
- NORCE Research AS (NO)
- Université Grenoble Alpes (FR)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-04-28
- DOI
- https://doi.org/10.1093/bioinformatics/btaf230
- Citations
- 1
- Primary Topic
- Microbial Community Ecology and Physiology
- Type
- article
- Field-Weighted Citation Impact
- 1.72
Funders
- European Commission
- Agence Nationale de la Recherche