Integrated bioinformatics and machine learning reveal key genes and immune mechanisms associated with uremia

Uremia is a serious complication of end-stage chronic kidney disease, closely associated with immune imbalance and chronic inflammation. However, its molecular mechanisms remain largely unclear. In this study, we analyzed transcriptomic data from the GSE37171 dataset to identify genes associated with uremia. Differential expression and WGCNA analyses were used to screen core genes, followed by machine learning (LASSO, Random Forest, SVM-RFE) to identify key feature genes. GSEA and immune infiltration analyses were conducted to explore functional pathways and immune relevance. ROC curves were used to evaluate the discriminatory power of the selected genes. Four feature genes-NAF1, SNORD4A, CGB3, and CD3E-were identified. These genes were enriched in pathways related to apoptosis, immune regulation, and oxidative stress. Their expression levels correlated with multiple immune cell types, and ROC analysis demonstrated good discriminatory performance between uremia and healthy samples. Our findings provide potential molecular candidates for further investigation into the immune-related mechanisms of uremia.

Authors

Institutions

Publication Details

Journal
Scientific Reports
Published
2025-07-14
DOI
https://doi.org/10.1038/s41598-025-09950-8
Citations
1
Primary Topic
Diabetes and associated disorders
Type
article
Field-Weighted Citation Impact
1.82
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Integrated bioinformatics and machine learning reveal key genes and immune mechanisms associated with uremia

Zhiyue Sun, Jiangtao Li, Zhen Ding, Bo Wen et al.
1 citations
Scientific Reports
Diabetes and associated disorders
1.82
article

Integrated bioinformatics and machine learning reveal key genes and immune mechanisms associated with uremia

Zhiyue Sun, Jiangtao Li, Zhen Ding, Bo Wen, Daoyuan Ding, Xiaoyang Guo
article en
1 citations

Abstract

Uremia is a serious complication of end-stage chronic kidney disease, closely associated with immune imbalance and chronic inflammation. However, its molecular mechanisms remain largely unclear. In this study, we analyzed transcriptomic data from the GSE37171 dataset to identify genes associated with uremia. Differential expression and WGCNA analyses were used to screen core genes, followed by machine learning (LASSO, Random Forest, SVM-RFE) to identify key feature genes. GSEA and immune infiltration analyses were conducted to explore functional pathways and immune relevance. ROC curves were used to evaluate the discriminatory power of the selected genes. Four feature genes-NAF1, SNORD4A, CGB3, and CD3E-were identified. These genes were enriched in pathways related to apoptosis, immune regulation, and oxidative stress. Their expression levels correlated with multiple immune cell types, and ROC analysis demonstrated good discriminatory performance between uremia and healthy samples. Our findings provide potential molecular candidates for further investigation into the immune-related mechanisms of uremia.

Scientific ReportsVol. 15(1)
Guangzhou University of Chinese Medicine (CN), Integrated Chinese Medicine (China) (HK), Chinese University of Hong Kong, Shenzhen (CN), Shenzhen Pingle Orthopedic Hospital (CN)
Zero hunger
Openalex Percentile: Top 14%
Diabetes and associated disorders
1.82
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.