Barbituric Acid Derivatives as Covalent Inhibitors of <i>Leishmania braziliensis</i> Dihydroorotate Dehydrogenase
Covalent drug design applied to parasite proteins enables selective therapies by targeting nucleophilic residues of macromolecules. We present the first covalent inhibitors of <i><i>Leishmania braziliensis</i></i> dihydroorotate dehydrogenase (<i>Lb</i>DHODH), a key enzyme in pyrimidine biosynthesis with a reactive cysteine (Cys<sup>131</sup>) in its active site. From barbituric acid derivatives, we discovered <b>2i</b> as a <i>Lb</i>DHODH inhibitor with leishmanicidal activity, exhibiting an IC<sub>5</sub><sub>0</sub> of 0.5 ± 0.1 μM, a K<sub>inact</sub>/K<i>I</i> of 767 M<sup>-1</sup>s<sup>-1</sup>, no inhibition of the human ortholog, and an EC<sub>5</sub><sub>0</sub> of 11 ± 5 μM in <i><i>L. braziliensis</i></i> promastigotes, with no cytotoxicity in THP-1 cells and good passive permeability. X-ray crystallography confirms covalent bond formation with Cys<sup>131</sup> and reveals active-site rearrangements. These findings support the proposed covalent inhibition mechanism and provide structural insights for further optimization. Our study validates <i>Lb</i>DHODH as a promising target for leishmaniasis therapy and highlights the potential of covalent inhibition in antiparasitic drug discovery.
Authors
- Leonardo Loch (ORCID: https://orcid.org/0000-0001-8646-548X)
- Maria Cristina Nonato (ORCID: https://orcid.org/0000-0002-4916-1505)
- Pedro Ivo Palácio Leite (ORCID: https://orcid.org/0000-0003-1848-4923)
- Jadel M. Kratz (ORCID: https://orcid.org/0000-0002-7681-8234)
- Temitayo Omowumi Alegbejo Price (ORCID: https://orcid.org/0000-0002-8750-0635)
- Thiago dos Santos (ORCID: https://orcid.org/0000-0001-7908-8604)
- Sérgio Schenkman (ORCID: https://orcid.org/0000-0001-9353-8480)
- Miguel de Menezes Vaidergorn (ORCID: https://orcid.org/0000-0003-2343-2888)
- Thamires Quadros Froes (ORCID: https://orcid.org/0000-0001-7951-7560)
- Flávio da Silva Emery (ORCID: https://orcid.org/0000-0002-8652-7123)
- Aline Dias da Purificação (ORCID: https://orcid.org/0000-0002-3127-7585)
- Daniel Gedder Silva (ORCID: https://orcid.org/0000-0001-8879-456X)
- Bruna Fleck Godoi (ORCID: https://orcid.org/0000-0002-5910-0511)
Institutions
- Drugs for Neglected Diseases Initiative (CH)
- Target (United States) (US)
- Institute of Crystallography (IT)
- Universidade Federal de São Paulo (BR)
Publication Details
- Journal
- Journal of Medicinal Chemistry
- Published
- 2025-07-14
- DOI
- https://doi.org/10.1021/acs.jmedchem.5c00462
- Primary Topic
- Biochemical and Molecular Research
- Type
- article
- Field-Weighted Citation Impact
- 0.00