Barbituric Acid Derivatives as Covalent Inhibitors of <i>Leishmania braziliensis</i> Dihydroorotate Dehydrogenase

Covalent drug design applied to parasite proteins enables selective therapies by targeting nucleophilic residues of macromolecules. We present the first covalent inhibitors of <i><i>Leishmania braziliensis</i></i> dihydroorotate dehydrogenase (<i>Lb</i>DHODH), a key enzyme in pyrimidine biosynthesis with a reactive cysteine (Cys<sup>131</sup>) in its active site. From barbituric acid derivatives, we discovered <b>2i</b> as a <i>Lb</i>DHODH inhibitor with leishmanicidal activity, exhibiting an IC<sub>5</sub><sub>0</sub> of 0.5 ± 0.1 μM, a K<sub>inact</sub>/K<i>I</i> of 767 M<sup>-1</sup>s<sup>-1</sup>, no inhibition of the human ortholog, and an EC<sub>5</sub><sub>0</sub> of 11 ± 5 μM in <i><i>L. braziliensis</i></i> promastigotes, with no cytotoxicity in THP-1 cells and good passive permeability. X-ray crystallography confirms covalent bond formation with Cys<sup>131</sup> and reveals active-site rearrangements. These findings support the proposed covalent inhibition mechanism and provide structural insights for further optimization. Our study validates <i>Lb</i>DHODH as a promising target for leishmaniasis therapy and highlights the potential of covalent inhibition in antiparasitic drug discovery.

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Journal
Journal of Medicinal Chemistry
Published
2025-07-14
DOI
https://doi.org/10.1021/acs.jmedchem.5c00462
Primary Topic
Biochemical and Molecular Research
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article
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article

Barbituric Acid Derivatives as Covalent Inhibitors of Leishmania braziliensis Dihydroorotate Dehydrogenase

Leonardo Loch, Maria Cristina Nonato, Pedro Ivo Palácio Leite, Jadel M. Kratz et al.
Journal of Medicinal Chemistry
Biochemical and Molecular Research
article

Barbituric Acid Derivatives as Covalent Inhibitors of Leishmania braziliensis Dihydroorotate Dehydrogenase

Leonardo Loch, Maria Cristina Nonato, Pedro Ivo Palácio Leite, Jadel M. Kratz, Temitayo Omowumi Alegbejo Price, Thiago dos Santos, Sérgio Schenkman, Miguel de Menezes Vaidergorn, Thamires Quadros Froes, Flávio da Silva Emery, Aline Dias da Purificação, Daniel Gedder Silva, Bruna Fleck Godoi
article en

Abstract

Covalent drug design applied to parasite proteins enables selective therapies by targeting nucleophilic residues of macromolecules. We present the first covalent inhibitors of <i><i>Leishmania braziliensis</i></i> dihydroorotate dehydrogenase (<i>Lb</i>DHODH), a key enzyme in pyrimidine biosynthesis with a reactive cysteine (Cys<sup>131</sup>) in its active site. From barbituric acid derivatives, we discovered <b>2i</b> as a <i>Lb</i>DHODH inhibitor with leishmanicidal activity, exhibiting an IC<sub>5</sub><sub>0</sub> of 0.5 ± 0.1 μM, a K<sub>inact</sub>/K<i>I</i> of 767 M<sup>-1</sup>s<sup>-1</sup>, no inhibition of the human ortholog, and an EC<sub>5</sub><sub>0</sub> of 11 ± 5 μM in <i><i>L. braziliensis</i></i> promastigotes, with no cytotoxicity in THP-1 cells and good passive permeability. X-ray crystallography confirms covalent bond formation with Cys<sup>131</sup> and reveals active-site rearrangements. These findings support the proposed covalent inhibition mechanism and provide structural insights for further optimization. Our study validates <i>Lb</i>DHODH as a promising target for leishmaniasis therapy and highlights the potential of covalent inhibition in antiparasitic drug discovery.

Journal of Medicinal ChemistryVol. 68(18)
Drugs for Neglected Diseases Initiative (CH), Target (United States) (US), Institute of Crystallography (IT), Universidade Federal de São Paulo (BR)
Openalex Percentile: Top 85%
Biochemical and Molecular Research
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