Improving Individual Tree Crown Detection and Species Classification in a Complex Mixed Conifer–Broadleaf Forest Using Two Machine Learning Models with Different Combinations of Metrics Derived from UAV Imagery

Individual tree crown detection (ITCD) and tree species classification are critical for forest inventory, species-specific monitoring, and ecological studies. However, accurately detecting tree crowns and identifying species in structurally complex forests with overlapping canopies remains challenging. This study was conducted in a complex mixed conifer–broadleaf forest in northern Japan, aiming to improve ITCD and species classification by employing two machine learning models and different combinations of metrics derived from very high-resolution (2.5 cm) UAV red–green–blue (RGB) and multispectral (MS) imagery. We first enhanced ITCD by integrating different combinations of metrics into multiresolution segmentation (MRS) and DeepForest (DF) models. ITCD accuracy was evaluated across dominant forest types and tree density classes. Next, nine tree species were classified using the ITCD outputs from both MRS and DF approaches, applying Random Forest and DF models, respectively. Incorporating structural, textural, and spectral metrics improved MRS-based ITCD, achieving F-scores of 0.44–0.58. The DF model, which used only structural and spectral metrics, achieved higher F-scores of 0.62–0.79. For species classification, the Random Forest model achieved a Kappa value of 0.81, while the DF model attained a higher Kappa value of 0.91. These findings demonstrate the effectiveness of integrating UAV-derived metrics and advanced modeling approaches for accurate ITCD and species classification in heterogeneous forest environments. The proposed methodology offers a scalable and cost-efficient solution for detailed forest monitoring and species-level assessment.