Highly parallel optimisation of chemical reactions through automation and machine intelligence

We report the development and application of a scalable machine learning (ML) framework (Minerva) for highly parallel multi-objective reaction optimisation with automated high-throughput experimentation (HTE). Minerva demonstrates robust performance with experimental data-derived benchmarks, efficiently handling large parallel batches, high-dimensional search spaces, reaction noise, and batch constraints present in real-world laboratories. Validating our approach experimentally, we apply Minerva in a 96-well HTE reaction optimisation campaign for a nickel-catalysed Suzuki reaction, tackling challenges in non-precious metal catalysis. Our approach effectively navigates the complex reaction landscape with unexpected chemical reactivity, outperforming traditional experimentalist-driven methods. Extending to industrial applications, we deploy Minerva in pharmaceutical process development, successfully optimising two active pharmaceutical ingredient (API) syntheses. For both a Ni-catalysed Suzuki coupling and a Pd-catalysed Buchwald-Hartwig reaction, our approach identifies multiple conditions achieving >95 area percent (AP) yield and selectivity, directly translating to improved process conditions at scale.

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Publication Details

Journal
Nature Communications
Published
2025-07-12
DOI
https://doi.org/10.1038/s41467-025-61803-0
Citations
11
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
5.70

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article

Highly parallel optimisation of chemical reactions through automation and machine intelligence

Philippe Schwaller, Raphael Bigler, Siu Lun Chau, Kurt Püntener et al.
11 citations
Nature Communications
Machine Learning in Materials Science
5.70
article

Highly parallel optimisation of chemical reactions through automation and machine intelligence

Philippe Schwaller, Raphael Bigler, Siu Lun Chau, Kurt Püntener, Joshua W. Sin, Ryan P. Burwood
article en
11 citations

Abstract

We report the development and application of a scalable machine learning (ML) framework (Minerva) for highly parallel multi-objective reaction optimisation with automated high-throughput experimentation (HTE). Minerva demonstrates robust performance with experimental data-derived benchmarks, efficiently handling large parallel batches, high-dimensional search spaces, reaction noise, and batch constraints present in real-world laboratories. Validating our approach experimentally, we apply Minerva in a 96-well HTE reaction optimisation campaign for a nickel-catalysed Suzuki reaction, tackling challenges in non-precious metal catalysis. Our approach effectively navigates the complex reaction landscape with unexpected chemical reactivity, outperforming traditional experimentalist-driven methods. Extending to industrial applications, we deploy Minerva in pharmaceutical process development, successfully optimising two active pharmaceutical ingredient (API) syntheses. For both a Ni-catalysed Suzuki coupling and a Pd-catalysed Buchwald-Hartwig reaction, our approach identifies multiple conditions achieving >95 area percent (AP) yield and selectivity, directly translating to improved process conditions at scale.

Nature CommunicationsVol. 16(1)
Roche (Switzerland) (CH), Rational (Germany) (DE), Helmholtz Center for Information Security (DE), École Polytechnique Fédérale de Lausanne (CH)
National Science Foundation, F. Hoffmann-La Roche, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
Industry, innovation and infrastructure
Openalex Percentile: Top 3%
Machine Learning in Materials Science
5.70
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Highly parallel optimisation of chemical reactions through automation and machine intelligence — Philippe Schwaller, Raphael Bigler, et al. · Nature Communications (2025) | TGRS Research Map | TGRS