Shapechain: Revealing Oxytocin-Receptor Structural Mimicry with AI Validation

Identifying structural mimicry in receptor-ligand interactions is vital for drug discovery. We introduce ShapeChain, a tool that converts protein sequences into symbolic geometric forms for rapid human detection of conserved motifs. Using ShapeChain on oxytocin (CYIQNCPLG) and its receptor (P30559), we identified a conserved receptor segment, MFASTYLLL (positions 123-131), with significant geometric similarity to oxytocin. AlphaFold2 predictions, validated by ChimeraX MatchMaker and measured with our Protein Prediction Quality Index (PPQI), show that MFASTYLLL achieves a PPQI of approximately 75.38, compared to oxytocin's 48.50. These results suggest that MFASTYLLL is a structurally robust element that may aid receptor activation and reflect coevolutionary trends. Our framework combines symbolic sequence analysis with AI-driven structural validation, offering a scalable method for motif identification and receptor-ligand modeling.

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Published
2025-05-05
DOI
https://doi.org/10.1109/cai64502.2025.00107
Primary Topic
Neuroendocrine regulation and behavior
Type
article
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article

Shapechain: Revealing Oxytocin-Receptor Structural Mimicry with AI Validation

Ahmad Patooghy, Tia Pope
Neuroendocrine regulation and behavior
article

Shapechain: Revealing Oxytocin-Receptor Structural Mimicry with AI Validation

Ahmad Patooghy, Tia Pope
article en

Abstract

Identifying structural mimicry in receptor-ligand interactions is vital for drug discovery. We introduce ShapeChain, a tool that converts protein sequences into symbolic geometric forms for rapid human detection of conserved motifs. Using ShapeChain on oxytocin (CYIQNCPLG) and its receptor (P30559), we identified a conserved receptor segment, MFASTYLLL (positions 123-131), with significant geometric similarity to oxytocin. AlphaFold2 predictions, validated by ChimeraX MatchMaker and measured with our Protein Prediction Quality Index (PPQI), show that MFASTYLLL achieves a PPQI of approximately 75.38, compared to oxytocin's 48.50. These results suggest that MFASTYLLL is a structurally robust element that may aid receptor activation and reflect coevolutionary trends. Our framework combines symbolic sequence analysis with AI-driven structural validation, offering a scalable method for motif identification and receptor-ligand modeling.

North Carolina Agricultural and Technical State University (US), Systems Technology (United States) (US)
Openalex Percentile: Top 81%
Neuroendocrine regulation and behavior
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