Discovery of SARS-CoV-2 Main Protease Inhibitors from NaturalProducts via Machine Learning with Pharmacophore Modeling, SimilarityMethods, and Molecular Dynamics

result: Two rounds of molecular docking were applied to filter and refine the hits, leading to the identification of 17 promising compounds with favorable binding interactions and physicochemical profiles. Molecular dynamics simulations of top hits demonstrated stable binding within the Mpro active site, with binding energies supporting their potential as potent inhibitors.

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Publication Details

Journal
Current Enzyme Inhibition
Published
2025-07-04
DOI
https://doi.org/10.2174/0115734080371991250605114818
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
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article

Discovery of SARS-CoV-2 Main Protease Inhibitors from NaturalProducts via Machine Learning with Pharmacophore Modeling, SimilarityMethods, and Molecular Dynamics

Mohammad A. Khanfar
Current Enzyme Inhibition
Computational Drug Discovery Methods
article

Discovery of SARS-CoV-2 Main Protease Inhibitors from NaturalProducts via Machine Learning with Pharmacophore Modeling, SimilarityMethods, and Molecular Dynamics

Mohammad A. Khanfar
article en

Abstract

result: Two rounds of molecular docking were applied to filter and refine the hits, leading to the identification of 17 promising compounds with favorable binding interactions and physicochemical profiles. Molecular dynamics simulations of top hits demonstrated stable binding within the Mpro active site, with binding energies supporting their potential as potent inhibitors.

Current Enzyme InhibitionVol. 21
Alfaisal University (SA)
Openalex Percentile: Top 82%
Computational Drug Discovery Methods
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