Determination of survival associated genetic biomarkers to discover novel therapeutic targets for acute myeloid leukaemia

Acute myeloid leukemia (AML) is a heterogeneous malignancy specified by clonal proliferation of hematopoietic stem cells. This study identifies novel therapeutics for AML by integrating differential gene expression (DEG) and survival analyses. Publicly available GEO microarray datasets were analyzed, including data from 615 AML patients and 22 healthy controls. Multivariate Cox regression identified hazardous genes impacting survival. Protein-protein interaction networks using CytoScape revealed hub genes such as CCT5, ZBTB16, APP, and PTPN6. Functional enrichment revealed key AML-related pathways, such as PI3K/Akt and NF-kappaB signaling. Drug repurposing using the LINCS L1000CDS2 database highlighted potential therapeutics, including 16-Hydroxytriptolide and Tryptosthin AG-1478, with roles in reversing hazardous gene expression patterns. Additional candidates such as Vemurafenib, Parthenolide and Wortmannin, demonstrated promise as targeted agents. These findings underscore the potential of integrating bioinformatics and drug discovery to identify precision medicine in AML. Further studies are warranted to validate these targets and explore their clinical utility.

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Publication Details

Journal
Journal of Chemotherapy
Published
2025-07-05
DOI
https://doi.org/10.1080/1120009x.2025.2527464
Primary Topic
Acute Myeloid Leukemia Research
Type
article
Field-Weighted Citation Impact
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article

Determination of survival associated genetic biomarkers to discover novel therapeutic targets for acute myeloid leukaemia

Yağmur Kiraz, Gizem Ayna Duran, Cansu Ergun
1 links
Journal of Chemotherapy
Acute Myeloid Leukemia Research
article

Determination of survival associated genetic biomarkers to discover novel therapeutic targets for acute myeloid leukaemia

Yağmur Kiraz, Gizem Ayna Duran, Cansu Ergun
article en

Abstract

Acute myeloid leukemia (AML) is a heterogeneous malignancy specified by clonal proliferation of hematopoietic stem cells. This study identifies novel therapeutics for AML by integrating differential gene expression (DEG) and survival analyses. Publicly available GEO microarray datasets were analyzed, including data from 615 AML patients and 22 healthy controls. Multivariate Cox regression identified hazardous genes impacting survival. Protein-protein interaction networks using CytoScape revealed hub genes such as CCT5, ZBTB16, APP, and PTPN6. Functional enrichment revealed key AML-related pathways, such as PI3K/Akt and NF-kappaB signaling. Drug repurposing using the LINCS L1000CDS2 database highlighted potential therapeutics, including 16-Hydroxytriptolide and Tryptosthin AG-1478, with roles in reversing hazardous gene expression patterns. Additional candidates such as Vemurafenib, Parthenolide and Wortmannin, demonstrated promise as targeted agents. These findings underscore the potential of integrating bioinformatics and drug discovery to identify precision medicine in AML. Further studies are warranted to validate these targets and explore their clinical utility.

Journal of Chemotherapy
İzmir University of Economics (TR)
Zero hunger
Openalex Percentile: Top 79%
Acute Myeloid Leukemia Research
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Determination of survival associated genetic biomarkers to discover novel therapeutic targets for acute myeloid leukaemia — Yağmur Kiraz, Gizem Ayna Duran, et al. · Journal of Chemotherapy (2025) | TGRS Research Map | TGRS