Seeing herbaria in a new light: leaf reflectance spectroscopy unlocks trait and classification modeling in plant biodiversity collections

Reflectance spectroscopy is a rapid method for estimating traits and discriminating species. Spectral libraries from herbarium specimens represent an untapped resource for generating broad phenomic datasets across space, time, and taxa. We conducted a proof-of-concept study using trait data and spectra from herbarium specimens up to 179 yr old, alongside data from recently dried and pressed leaves. We validated model accuracy and transferability for trait prediction and taxonomic discrimination. Trait models from herbarium spectra predicted leaf mass per area (LMA) with R<sup>2</sup> = 0.94 and %RMSE = 4.86%. Models for LMA prediction were transferable between herbarium and pressed spectra, achieving R<sup>2</sup> = 0.88, %RMSE = 8.76% for herbarium to pressed spectra, and R<sup>2</sup> = 0.76, %RMSE = 10.5% for the reverse transfer. Discriminant models classified leaf spectra from 25 species with 74% accuracy, and classification probabilities were significantly associated with several herbarium specimen quality metrics. The results validate herbarium spectral data for trait prediction and taxonomic discrimination, and demonstrate that trait modeling can benefit from the complementary use of pressed-leaf and herbarium-leaf spectral datasets. These promising advancements help to justify the spectral digitization of plant biodiversity collections and support their application in broad ecological and evolutionary investigations.

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Publication Details

Journal
New Phytologist
Published
2025-07-04
DOI
https://doi.org/10.1111/nph.70357
Citations
2
Primary Topic
Remote Sensing in Agriculture
Type
article
Field-Weighted Citation Impact
3.43

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article

Seeing herbaria in a new light: leaf reflectance spectroscopy unlocks trait and classification modeling in plant biodiversity collections

J. Antonio Guzmán Q., Jeannine Cavender‐Bares, Dawson M. White, Shan Kothari et al.
2 citations
New Phytologist
Remote Sensing in Agriculture
3.43
article

Seeing herbaria in a new light: leaf reflectance spectroscopy unlocks trait and classification modeling in plant biodiversity collections

J. Antonio Guzmán Q., Jeannine Cavender‐Bares, Dawson M. White, Shan Kothari, Charles C. Davis, José Eduardo Meireles, Jorge M. Robles
article en
2 citations

Abstract

Reflectance spectroscopy is a rapid method for estimating traits and discriminating species. Spectral libraries from herbarium specimens represent an untapped resource for generating broad phenomic datasets across space, time, and taxa. We conducted a proof-of-concept study using trait data and spectra from herbarium specimens up to 179 yr old, alongside data from recently dried and pressed leaves. We validated model accuracy and transferability for trait prediction and taxonomic discrimination. Trait models from herbarium spectra predicted leaf mass per area (LMA) with R<sup>2</sup> = 0.94 and %RMSE = 4.86%. Models for LMA prediction were transferable between herbarium and pressed spectra, achieving R<sup>2</sup> = 0.88, %RMSE = 8.76% for herbarium to pressed spectra, and R<sup>2</sup> = 0.76, %RMSE = 10.5% for the reverse transfer. Discriminant models classified leaf spectra from 25 species with 74% accuracy, and classification probabilities were significantly associated with several herbarium specimen quality metrics. The results validate herbarium spectral data for trait prediction and taxonomic discrimination, and demonstrate that trait modeling can benefit from the complementary use of pressed-leaf and herbarium-leaf spectral datasets. These promising advancements help to justify the spectral digitization of plant biodiversity collections and support their application in broad ecological and evolutionary investigations.

New Phytologist
Harvard University (US), University of Alberta (CA), California State University, San Marcos (US), Harvard University Press (US), University of Maine (US)
National Science Foundation, Harvard University, Division of Biological Infrastructure, Division of Environmental Biology
Reduced inequalities
Openalex Percentile: Top 8%
Remote Sensing in Agriculture
3.43
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