Color Normalization by Dictionary Learning with Nuclear Segmentation Evaluation in H&E Histological Images

Cancer is a major health concern in Brazil and globally and is characterized by its high incidence and mortality rates. Diagnosis typically involves the preparation and microscopic analysis of tissue samples, which are often stained with hematoxylin and eosin (H&E). However, color variation in these images poses a significant challenge for computeraided diagnosis systems. This study explored dictionary learning techniques for H&E stain color normalization by utilizing public histological image datasets with varying colors for performance comparisons. The findings revealed that the non-negative matrix factorization techniques outperformed existing methods in the literature, particularly in feature preservation, achieving maximum FSIM, PSNR, QSSIM, and SSIM values of approximately 0.82, 40.21, 0.84, and 0.93, respectively. Furthermore, the impact of normalization on nuclear segmentation highlighted that the visual quality of the normalized images did not directly correlate with the quantitative segmentation results. Therefore, this study raises important open questions for the development of future research in this area.

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Published
2025-06-18
DOI
https://doi.org/10.1109/cbms65348.2025.00129
Citations
1
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
2.48

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article

Color Normalization by Dictionary Learning with Nuclear Segmentation Evaluation in H&E Histological Images

Marcelo Zanchetta do Nascimento, Tháına A. A. Tosta, Leandro Alves Neves, Paulo Rogério de Faria et al.
1 citations
AI in cancer detection
2.48
article

Color Normalization by Dictionary Learning with Nuclear Segmentation Evaluation in H&E Histological Images

Marcelo Zanchetta do Nascimento, Tháına A. A. Tosta, Leandro Alves Neves, Paulo Rogério de Faria, André Dias Freitas, André Silva
article en
1 citations

Abstract

Cancer is a major health concern in Brazil and globally and is characterized by its high incidence and mortality rates. Diagnosis typically involves the preparation and microscopic analysis of tissue samples, which are often stained with hematoxylin and eosin (H&E). However, color variation in these images poses a significant challenge for computeraided diagnosis systems. This study explored dictionary learning techniques for H&E stain color normalization by utilizing public histological image datasets with varying colors for performance comparisons. The findings revealed that the non-negative matrix factorization techniques outperformed existing methods in the literature, particularly in feature preservation, achieving maximum FSIM, PSNR, QSSIM, and SSIM values of approximately 0.82, 40.21, 0.84, and 0.93, respectively. Furthermore, the impact of normalization on nuclear segmentation highlighted that the visual quality of the normalized images did not directly correlate with the quantitative segmentation results. Therefore, this study raises important open questions for the development of future research in this area.

Universidade Federal de Uberlândia (BR)
Fundação de Amparo à Pesquisa do Estado de São Paulo, Conselho Nacional de Desenvolvimento Científico e Tecnológico, Fundação de Amparo à Pesquisa do Estado de Minas Gerais
Quality Education
Openalex Percentile: Top 10%
AI in cancer detection
2.48
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Color Normalization by Dictionary Learning with Nuclear Segmentation Evaluation in H&E Histological Images — Marcelo Zanchetta do Nascimento, Tháına A. A. Tosta, et al. · (2025) | TGRS Research Map | TGRS