A Distributed Data Infrastructure for Open Bioinformatics Research

This paper outlines a distributed data infrastructure designed to enhance open bioinformatics research, particularly in enzyme structure investigation. Utilizing high-throughput computing and cloud resources, such as AWS, the architecture facilitates collaborative workflows while ensuring robust user management, security, data integrity, and scalability. Powered by a Django backend and an Angular frontend, the infrastructure promotes seamless communication and data handling. A case study demonstrates its application in enzyme structure analysis using computational tools like AlphaFold and AlphaFill, revealing improvements in understanding enzymatic functions and accelerating drug discovery. Ultimately, this infrastructure aims to improve the efficiency and accessibility of bioinformatics research.

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Publication Details

Published
2025-03-14
DOI
https://doi.org/10.1109/icict64582.2025.00073
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
0.00

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article

A Distributed Data Infrastructure for Open Bioinformatics Research

Mingwei Shen, Dali Wang, Eric W. Wang, Weijiao Wang et al.
Scientific Computing and Data Management
article

A Distributed Data Infrastructure for Open Bioinformatics Research

Mingwei Shen, Dali Wang, Eric W. Wang, Weijiao Wang, Feng Chen
article en

Abstract

This paper outlines a distributed data infrastructure designed to enhance open bioinformatics research, particularly in enzyme structure investigation. Utilizing high-throughput computing and cloud resources, such as AWS, the architecture facilitates collaborative workflows while ensuring robust user management, security, data integrity, and scalability. Powered by a Django backend and an Angular frontend, the infrastructure promotes seamless communication and data handling. A case study demonstrates its application in enzyme structure analysis using computational tools like AlphaFold and AlphaFill, revealing improvements in understanding enzymatic functions and accelerating drug discovery. Ultimately, this infrastructure aims to improve the efficiency and accessibility of bioinformatics research.

North Carolina State University (US), University of Tennessee at Knoxville (US)
U.S. Department of Energy, University of Tennessee, Knoxville, Office of Science, Workforce Development for Teachers and Scientists, Oak Ridge National Laboratory
Industry, innovation and infrastructure
Openalex Percentile: Top 84%
Scientific Computing and Data Management
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