NuclampFISH enables cell sorting based on nuclear RNA expression for chromatin analysis
This new method enables the sorting of cells based on transcriptional bursts. This method combines the specificity of a single-cell assay for detecting transcription sites with the throughput of flow cytometry to enable bulk assays such as chromatin conformation or other biochemical assays. Notably, the tools developed are highly accessible and do not require specialized computation or equipment.
Authors
- Keqing Nian
- Yuchen Qiu (ORCID: https://orcid.org/0000-0001-6047-7204)
- Yifang Liu (ORCID: https://orcid.org/0000-0003-3800-5512)
- Sara H. Rouhanifard (ORCID: https://orcid.org/0000-0002-6991-4877)
Institutions
- Northeastern University (US)
Publication Details
- Journal
- BMC Genomics
- Published
- 2025-07-01
- DOI
- https://doi.org/10.1186/s12864-025-11818-0
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.00