NuclampFISH enables cell sorting based on nuclear RNA expression for chromatin analysis

This new method enables the sorting of cells based on transcriptional bursts. This method combines the specificity of a single-cell assay for detecting transcription sites with the throughput of flow cytometry to enable bulk assays such as chromatin conformation or other biochemical assays. Notably, the tools developed are highly accessible and do not require specialized computation or equipment.

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Publication Details

Journal
BMC Genomics
Published
2025-07-01
DOI
https://doi.org/10.1186/s12864-025-11818-0
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
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article

NuclampFISH enables cell sorting based on nuclear RNA expression for chromatin analysis

Keqing Nian, Yuchen Qiu, Yifang Liu, Sara H. Rouhanifard
BMC Genomics
Single-cell and spatial transcriptomics
article

NuclampFISH enables cell sorting based on nuclear RNA expression for chromatin analysis

Keqing Nian, Yuchen Qiu, Yifang Liu, Sara H. Rouhanifard
article en

Abstract

This new method enables the sorting of cells based on transcriptional bursts. This method combines the specificity of a single-cell assay for detecting transcription sites with the throughput of flow cytometry to enable bulk assays such as chromatin conformation or other biochemical assays. Notably, the tools developed are highly accessible and do not require specialized computation or equipment.

BMC GenomicsVol. 26(1)
Northeastern University (US)
Life below water
Openalex Percentile: Top 86%
Single-cell and spatial transcriptomics
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