Development of Phenotypic Microbial Sensing System by AI-driven AC Nanopore Method

In this study, we developed a double-sided offset ring-electrode nanopore device and a prototype hand-held measurement system, and evaluated the overall performance for the application of AI-driven AC nanopore method to microbial phenotypic sensing. First, the particle measurement performance was evaluated and found that the sensitivity was approximately three times higher than that of conventional systems for particles up to 120 nm in diameter. n microbial identification using a single nanopore device, the accuracy of classification of 16 types of bacteria and 11 types of viruses using a convolutional neural network was approximately 83% and 78%, respectively. This suggests the possibility of classifying both bacteria and viruses with a single nanopore diameter. Furthermore, the method achieved 94.5% accuracy in three basic classification tasks of conventional colony counting method, demonstrating that this method is upward compatible with colony counting methods.

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Publication Details

Journal
IEEJ Transactions on Sensors and Micromachines
Published
2025-06-30
DOI
https://doi.org/10.1541/ieejsmas.145.151
Primary Topic
Nanopore and Nanochannel Transport Studies
Type
article
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article

Development of Phenotypic Microbial Sensing System by AI-driven AC Nanopore Method

T. Sekiya, Hiroaki Takeuchi, K. Kita, Kentaro Hayashida et al.
IEEJ Transactions on Sensors and Micromachines
Nanopore and Nanochannel Transport Studies
article

Development of Phenotypic Microbial Sensing System by AI-driven AC Nanopore Method

T. Sekiya, Hiroaki Takeuchi, K. Kita, Kentaro Hayashida, Satoshi Hosoya, Takatoki Yamamoto, Takashi Majima, Yuichiro Hara
article en

Abstract

In this study, we developed a double-sided offset ring-electrode nanopore device and a prototype hand-held measurement system, and evaluated the overall performance for the application of AI-driven AC nanopore method to microbial phenotypic sensing. First, the particle measurement performance was evaluated and found that the sensitivity was approximately three times higher than that of conventional systems for particles up to 120 nm in diameter. n microbial identification using a single nanopore device, the accuracy of classification of 16 types of bacteria and 11 types of viruses using a convolutional neural network was approximately 83% and 78%, respectively. This suggests the possibility of classifying both bacteria and viruses with a single nanopore diameter. Furthermore, the method achieved 94.5% accuracy in three basic classification tasks of conventional colony counting method, demonstrating that this method is upward compatible with colony counting methods.

IEEJ Transactions on Sensors and MicromachinesVol. 145(7)
Shanghai Institute for Science of Science (CN), Institute of Science Tokyo (JP)
Zero hunger
Openalex Percentile: Top 86%
Nanopore and Nanochannel Transport Studies
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Development of Phenotypic Microbial Sensing System by AI-driven AC Nanopore Method — T. Sekiya, Hiroaki Takeuchi, et al. · IEEJ Transactions on Sensors and Micromachines (2025) | TGRS Research Map | TGRS