A Component Property Modeling Framework Utilizing Molecular Similarity for Accurate Predictions and Uncertainty Quantification

A key step in developing high-performance industrial products lies in the design of their constituent molecules. Computer-aided molecular design (CAMD) has garnered significant attention for its potential to accelerate and improve the design process. The mainstream method involves using property prediction models to predict the properties of potential molecules and selecting the best candidates based on these predictions. However, prediction errors are inevitable, introducing unreliability into the design. To address this issue, this paper proposes a novel component property modeling framework based on a molecular similarity coefficient. By calculating the similarity between a target molecule and those in an existing database, the framework selects the most similar molecules to form a tailored training dataset. The similarity coefficient also quantifies the reliability of the property predictions. In tests across various properties, this framework not only provides a quantifiable evaluation of prediction reliability but also improves the prediction accuracy of molecules with high reliability, which has the potential to enhance the integrity of molecular design.

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Publication Details

Journal
Systems and Control Transactions
Published
2025-06-30
DOI
https://doi.org/10.69997/sct.144140
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
0.00

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article

A Component Property Modeling Framework Utilizing Molecular Similarity for Accurate Predictions and Uncertainty Quantification

Anjan K. Tula, Youquan Xu, Zhijiang Shao
Systems and Control Transactions
Computational Drug Discovery Methods
article

A Component Property Modeling Framework Utilizing Molecular Similarity for Accurate Predictions and Uncertainty Quantification

Anjan K. Tula, Youquan Xu, Zhijiang Shao
article en

Abstract

A key step in developing high-performance industrial products lies in the design of their constituent molecules. Computer-aided molecular design (CAMD) has garnered significant attention for its potential to accelerate and improve the design process. The mainstream method involves using property prediction models to predict the properties of potential molecules and selecting the best candidates based on these predictions. However, prediction errors are inevitable, introducing unreliability into the design. To address this issue, this paper proposes a novel component property modeling framework based on a molecular similarity coefficient. By calculating the similarity between a target molecule and those in an existing database, the framework selects the most similar molecules to form a tailored training dataset. The similarity coefficient also quantifies the reliability of the property predictions. In tests across various properties, this framework not only provides a quantifiable evaluation of prediction reliability but also improves the prediction accuracy of molecules with high reliability, which has the potential to enhance the integrity of molecular design.

Systems and Control TransactionsVol. 4
State Key Laboratory of Industrial Control Technology (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 83%
Computational Drug Discovery Methods
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A Component Property Modeling Framework Utilizing Molecular Similarity for Accurate Predictions and Uncertainty Quantification — Anjan K. Tula, Youquan Xu, et al. · Systems and Control Transactions (2025) | TGRS Research Map | TGRS