Fast and flexible minimizer digestion with <tt>digest</tt>

Digest is implemented in C++17 with a Python API, and is available open-source at https://github.com/VeryAmazed/digest. The python library is available on Bioconda. Rust bindings are available as a public crate at https://crates.io/crates/digest-rs.

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Publication Details

Journal
Bioinformatics
Published
2025-06-20
DOI
https://doi.org/10.1093/bioinformatics/btaf368
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.00
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article

Fast and flexible minimizer digestion with <tt>digest</tt>

Ben Langmead, Omar Ahmed, Vikram S Shivakumar, Alan Zheng et al.
1 links
Bioinformatics
Genomics and Phylogenetic Studies
article

Fast and flexible minimizer digestion with <tt>digest</tt>

Ben Langmead, Omar Ahmed, Vikram S Shivakumar, Alan Zheng, Ishmeal Lee
article en

Abstract

Digest is implemented in C++17 with a Python API, and is available open-source at https://github.com/VeryAmazed/digest. The python library is available on Bioconda. Rust bindings are available as a public crate at https://crates.io/crates/digest-rs.

BioinformaticsVol. 41(7)
Johns Hopkins University (US)
Openalex Percentile: Top 86%
Genomics and Phylogenetic Studies
DOIOpen Access PDFOpenAlex
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Fast and flexible minimizer digestion with <tt>digest</tt> — Ben Langmead, Omar Ahmed, et al. · Bioinformatics (2025) | TGRS Research Map | TGRS