<scp>N4</scp>‐acetylcytidine <scp>mRNA</scp> modification regulates photosynthesis in plants

N4-acetylcytidine (ac<sup>4</sup>C), the only known acetylation modification of eukaryotic messenger RNA (mRNA), is highly conserved across species. However, the fundamental functions and regulatory mechanisms of it in plants remain largely unexplored. The comprehensive analyses of ac<sup>4</sup>C distribution on nuclear and plastid transcripts from six plant species revealed its conserved functions associated with chloroplast development and photosynthesis. Eliminating the RNA acetylase ACYR (N-ACETYLTRANSFERASEs FOR CYTIDINE IN RNA), which was also known as N-acetyltransferase 10 (NAT10), in Arabidopsis and rice led to impaired photosynthetic performance and compromised high-light (HL) acclimation. Multi-omics analyses employing acetylated RNA immunoprecipitation sequencing, RNA-seq, and Ribo-seq combined with biochemical analyses showed that the translation efficiency (TE) of LIGHT-HARVESTING COMPLEX II 2 (LHCB2), LHCB3, and LHCB4 transcripts was markedly suppressed upon loss of the ac<sup>4</sup>C modification, ultimately resulting in diminished abundance of their protein products. Therefore, LHC protein homeostasis modulated by the ac<sup>4</sup>C modification likely represents a functional link between RNA acetylation and ac<sup>4</sup>C-dependent photosynthesis. The TE of other photosynthesis-associated transcripts also declined, leading to a further reduction in the abundance of the corresponding proteins. Our study uncovered a previously unknown function for the ACYR-mediated ac<sup>4</sup>C modification on mRNA in regulating photosynthesis and HL acclimation across multiple plant species by improving the TE of components of the photosynthetic apparatus.

Authors

Institutions

Publication Details

Journal
New Phytologist
Published
2025-06-27
DOI
https://doi.org/10.1111/nph.70323
Citations
8
Primary Topic
RNA modifications and cancer
Type
article
Field-Weighted Citation Impact
6.45

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

N4‐acetylcytidine mRNA modification regulates photosynthesis in plants

Yanwu Lu, Wenbiao Shen, Mingjia Chen, Huatao Chen et al.
8 citations
New Phytologist
RNA modifications and cancer
6.45
article

N4‐acetylcytidine mRNA modification regulates photosynthesis in plants

Yanwu Lu, Wenbiao Shen, Mingjia Chen, Huatao Chen, Fadi Chen, Huiting Ci, Wenxian Liu, Huijie Liu, Yanpeng Li, Changhua Zhu, Zhenxing Wang, Meiqi Wang, Jie Zhao, Lijun Gan, Xiaoguang Chen, Tingting Li, Shiguo Chen
article en
8 citations

Abstract

N4-acetylcytidine (ac<sup>4</sup>C), the only known acetylation modification of eukaryotic messenger RNA (mRNA), is highly conserved across species. However, the fundamental functions and regulatory mechanisms of it in plants remain largely unexplored. The comprehensive analyses of ac<sup>4</sup>C distribution on nuclear and plastid transcripts from six plant species revealed its conserved functions associated with chloroplast development and photosynthesis. Eliminating the RNA acetylase ACYR (N-ACETYLTRANSFERASEs FOR CYTIDINE IN RNA), which was also known as N-acetyltransferase 10 (NAT10), in Arabidopsis and rice led to impaired photosynthetic performance and compromised high-light (HL) acclimation. Multi-omics analyses employing acetylated RNA immunoprecipitation sequencing, RNA-seq, and Ribo-seq combined with biochemical analyses showed that the translation efficiency (TE) of LIGHT-HARVESTING COMPLEX II 2 (LHCB2), LHCB3, and LHCB4 transcripts was markedly suppressed upon loss of the ac<sup>4</sup>C modification, ultimately resulting in diminished abundance of their protein products. Therefore, LHC protein homeostasis modulated by the ac<sup>4</sup>C modification likely represents a functional link between RNA acetylation and ac<sup>4</sup>C-dependent photosynthesis. The TE of other photosynthesis-associated transcripts also declined, leading to a further reduction in the abundance of the corresponding proteins. Our study uncovered a previously unknown function for the ACYR-mediated ac<sup>4</sup>C modification on mRNA in regulating photosynthesis and HL acclimation across multiple plant species by improving the TE of components of the photosynthetic apparatus.

New PhytologistVol. 247(5)
Nanjing Agricultural University (CN), Hangzhou Normal University (CN), Jiangsu Academy of Agricultural Sciences (CN), State Forestry and Grassland Administration (CN), Ministry of Agriculture and Rural Affairs (CN), Lanzhou University (CN)
National Natural Science Foundation of China, Government of Jiangsu Province, Natural Science Foundation of Jiangsu Province, Nanjing Agricultural University, Priority Academic Program Development of Jiangsu Higher Education Institutions
Life in Land
Openalex Percentile: Top 3%
RNA modifications and cancer
6.45
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.