Comparative Analysis of Codon Usage Bias in Transcriptomes of Eight Species of Formicidae

<b>Background:</b>Ants are among the most widely distributed eusocial insects, and desert ants, in particular, serve as important model organisms for studying animal navigation. <b>Methods</b>: In this study, we provide high-quality de novo transcriptomes for eight ant species: <i>Cataglyphis aenescens</i> (Nylander, 1849), <i>Formica approximans</i> Wheeler, 1933, <i>Lasius coloratus</i> Santschi, 1937, <i>Proformica mongolica</i> (Emery, 1901), <i>Proformica muusensis</i> Zhu, Wu, Duan & Xu, 2022, <i>Tapinoma geei</i> Wheeler, 1927, <i>Tapinoma rectinotum</i> Wheeler, 1927, and <i>Tetramorium tsushimae</i> Emery, 1925. <b>Results</b>: The GC content of coding sequences (CDSs) ranged from 43.61% to 46.20%, indicating a slightly AT-rich composition. Codon usage analysis identified 27 to 33 optimal codons per species, the majority of which ended with A or U. <b>Conclusions</b>: These transcriptomic resources provide critical insights into codon usage bias and establish a foundation for future research on molecular evolution, gene regulation, and environmental adaptation in ants inhabiting fragile desert ecosystems.

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Publication Details

Journal
Genes
Published
2025-06-27
DOI
https://doi.org/10.3390/genes16070749
Citations
2
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
1.61
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article

Comparative Analysis of Codon Usage Bias in Transcriptomes of Eight Species of Formicidae

Wenhui Zhu, Jiawei Wang, Liu W. Nie, Jing Wang
2 citations
Genes
RNA and protein synthesis mechanisms
1.61
article

Comparative Analysis of Codon Usage Bias in Transcriptomes of Eight Species of Formicidae

Wenhui Zhu, Jiawei Wang, Liu W. Nie, Jing Wang
article en
2 citations

Abstract

<b>Background:</b>Ants are among the most widely distributed eusocial insects, and desert ants, in particular, serve as important model organisms for studying animal navigation. <b>Methods</b>: In this study, we provide high-quality de novo transcriptomes for eight ant species: <i>Cataglyphis aenescens</i> (Nylander, 1849), <i>Formica approximans</i> Wheeler, 1933, <i>Lasius coloratus</i> Santschi, 1937, <i>Proformica mongolica</i> (Emery, 1901), <i>Proformica muusensis</i> Zhu, Wu, Duan & Xu, 2022, <i>Tapinoma geei</i> Wheeler, 1927, <i>Tapinoma rectinotum</i> Wheeler, 1927, and <i>Tetramorium tsushimae</i> Emery, 1925. <b>Results</b>: The GC content of coding sequences (CDSs) ranged from 43.61% to 46.20%, indicating a slightly AT-rich composition. Codon usage analysis identified 27 to 33 optimal codons per species, the majority of which ended with A or U. <b>Conclusions</b>: These transcriptomic resources provide critical insights into codon usage bias and establish a foundation for future research on molecular evolution, gene regulation, and environmental adaptation in ants inhabiting fragile desert ecosystems.

GenesVol. 16(7)
Shaanxi Normal University (CN)
Life below water
Openalex Percentile: Top 16%
RNA and protein synthesis mechanisms
1.61
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Comparative Analysis of Codon Usage Bias in Transcriptomes of Eight Species of Formicidae — Wenhui Zhu, Jiawei Wang, et al. · Genes (2025) | TGRS Research Map | TGRS