An Efficient Integrator Scheme for Sampling the (Quantum) Isobaric–Isothermal Ensemble in (Path Integral) Molecular Dynamics Simulations

Because most chemical or biological experiments are performed under conditions of controlled pressure and temperature, it is important to simulate the isobaric-isothermal ensemble at the atomic level to reveal the microscopic mechanism. By extending our efficient configuration sampling approach for the canonical ensemble, we propose a unified "middle" scheme to sample the coordinate (configuration) and volume distribution, which can accurately simulate either classical or quantum isobaric-isothermal processes. Various barostats and thermostats can be employed in the unified "middle" scheme for simulating real molecular systems with or without holonomic constraints. In particular, we demonstrate the recommended "middle" scheme by employing the Martyna-Tuckerman-Tobias-Klein barostat and stochastic cell-rescaling barostat, with the Langevin thermostat, in molecular simulation packages (DL_POLY, AMBER, GROMACS, and so forth). Benchmark numerical tests show that, without additional numerical effort, the "middle" scheme is competent in increasing the time interval by a factor of 5 ∼ 10 to achieve the same accuracy of converged results for most thermodynamic properties in (path integral) molecular dynamics simulations.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2025-06-27
DOI
https://doi.org/10.1021/acs.jctc.5c00573
Citations
1
Primary Topic
Spectroscopy and Quantum Chemical Studies
Type
article
Field-Weighted Citation Impact
1.25

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article

An Efficient Integrator Scheme for Sampling the (Quantum) Isobaric–Isothermal Ensemble in (Path Integral) Molecular Dynamics Simulations

Weizhou Wang, Weihao Liang, Jian Liu, C Wang et al.
1 citations
Journal of Chemical Theory and Computation
Spectroscopy and Quantum Chemical Studies
1.25
article

An Efficient Integrator Scheme for Sampling the (Quantum) Isobaric–Isothermal Ensemble in (Path Integral) Molecular Dynamics Simulations

Weizhou Wang, Weihao Liang, Jian Liu, C Wang, Sihan Wang, Cong Wang, Jiushu Shao, Xinchen She
article en
1 citations

Abstract

Because most chemical or biological experiments are performed under conditions of controlled pressure and temperature, it is important to simulate the isobaric-isothermal ensemble at the atomic level to reveal the microscopic mechanism. By extending our efficient configuration sampling approach for the canonical ensemble, we propose a unified "middle" scheme to sample the coordinate (configuration) and volume distribution, which can accurately simulate either classical or quantum isobaric-isothermal processes. Various barostats and thermostats can be employed in the unified "middle" scheme for simulating real molecular systems with or without holonomic constraints. In particular, we demonstrate the recommended "middle" scheme by employing the Martyna-Tuckerman-Tobias-Klein barostat and stochastic cell-rescaling barostat, with the Langevin thermostat, in molecular simulation packages (DL_POLY, AMBER, GROMACS, and so forth). Benchmark numerical tests show that, without additional numerical effort, the "middle" scheme is competent in increasing the time interval by a factor of 5 ∼ 10 to achieve the same accuracy of converged results for most thermodynamic properties in (path integral) molecular dynamics simulations.

Journal of Chemical Theory and ComputationVol. 21(13)
Peking University (CN), Beijing Normal University (CN), Beijing National Laboratory for Molecular Sciences (CN), Molecular Sciences Institute (US)
National Natural Science Foundation of China, National Science Fund for Distinguished Young Scholars
Openalex Percentile: Top 20%
Spectroscopy and Quantum Chemical Studies
1.25
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