Evaluating organic carbon in living and dead trees using GLCM features and explainable machine learning: insights from Italian national forest

An accurate estimation of organic carbon (OC) in forest ecosystems is essential for understanding carbon dynamics and informing climate change mitigation strategies. This study presents a novel, explainable machine learning framework to estimate two key carbon pools: carbon sequestration in living trees (CSE) and carbon storage in standing deadwood (SDC). The methodology is structured into five key steps. First, we extract Gray-Level Co-occurrence Matrix (GLCM) texture features from LiDAR-derived canopy height models to quantify spatial heterogeneity in forest structure. Second, we integrate these GLCM metrics with vegetation indices (VIs), geomorphological variables, and weather data to create six distinct input configurations. Third, we train and evaluate teen models on each configuration to assess model performance and feature synergy. Fourth, we apply SHapley Additive exPlanations (SHAP) to the three models to transform them into an interpretable white-box model, identifying key predictors such as AVG_mean, SD_entropy, and SD_homogeneity. Finally, we assess model uncertainty using jackknife resampling and error bar analysis. The results indicate that CatBoost and Random Forest models deliver the highest performance for OC estimation. This study is the first to apply GLCM features for the joint estimation of CSE and SDC at a regional scale and to integrate explainable AI into forest carbon modelling. The framework provides a practical, transparent tool for forest managers, policymakers, and carbon monitoring systems, supporting high-resolution, scalable, and interpretable OC assessments.

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Publication Details

Journal
Annals of GIS
Published
2025-06-27
DOI
https://doi.org/10.1080/19475683.2025.2523737
Primary Topic
Remote Sensing and LiDAR Applications
Type
article
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article

Evaluating organic carbon in living and dead trees using GLCM features and explainable machine learning: insights from Italian national forest

Francesca Giannetti, Luca Cadez, Antonio Tomao, Alex Falcon et al.
Annals of GIS
Remote Sensing and LiDAR Applications
article

Evaluating organic carbon in living and dead trees using GLCM features and explainable machine learning: insights from Italian national forest

Francesca Giannetti, Luca Cadez, Antonio Tomao, Alex Falcon, Giuseppe Serra, Giorgio Alberti, Mehdi Fasihi
article en

Abstract

An accurate estimation of organic carbon (OC) in forest ecosystems is essential for understanding carbon dynamics and informing climate change mitigation strategies. This study presents a novel, explainable machine learning framework to estimate two key carbon pools: carbon sequestration in living trees (CSE) and carbon storage in standing deadwood (SDC). The methodology is structured into five key steps. First, we extract Gray-Level Co-occurrence Matrix (GLCM) texture features from LiDAR-derived canopy height models to quantify spatial heterogeneity in forest structure. Second, we integrate these GLCM metrics with vegetation indices (VIs), geomorphological variables, and weather data to create six distinct input configurations. Third, we train and evaluate teen models on each configuration to assess model performance and feature synergy. Fourth, we apply SHapley Additive exPlanations (SHAP) to the three models to transform them into an interpretable white-box model, identifying key predictors such as AVG_mean, SD_entropy, and SD_homogeneity. Finally, we assess model uncertainty using jackknife resampling and error bar analysis. The results indicate that CatBoost and Random Forest models deliver the highest performance for OC estimation. This study is the first to apply GLCM features for the joint estimation of CSE and SDC at a regional scale and to integrate explainable AI into forest carbon modelling. The framework provides a practical, transparent tool for forest managers, policymakers, and carbon monitoring systems, supporting high-resolution, scalable, and interpretable OC assessments.

Annals of GISVol. 31(4)
University of Udine (IT), University of Florence (IT)
Life in Land, Zero hunger
Openalex Percentile: Top 86%
Remote Sensing and LiDAR Applications
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