Hydrogen-bond-assisted conformational selection of picaridin in the gas phase

Understanding the intrinsic shape of bioactive molecules such as picaridin is key to elucidating their mode of action. In this work, we characterize the gas-phase conformational landscape of picaridin, a flexible chiral repellent with two stereocenters. Broadband rotational spectroscopy combined with quantum chemical calculations reveals a single dominant conformer per enantiomeric pair, both stabilized by internal O-H⋯O hydrogen bonds. These intramolecular interactions induce conformational locking, constraining the hydroxyethyl chain and favouring a compact geometry. Non-covalent interaction analysis further confirms that dispersion and hydrogen bonding play a central role in conformational selection under isolated conditions.

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Publication Details

Journal
Physical Chemistry Chemical Physics
Published
2025-01-01
DOI
https://doi.org/10.1039/d5cp02108a
Citations
1
Primary Topic
Molecular Spectroscopy and Structure
Type
article
Field-Weighted Citation Impact
0.76

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Hydrogen-bond-assisted conformational selection of picaridin in the gas phase

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Hydrogen-bond-assisted conformational selection of picaridin in the gas phase

F. J. Basterrechea, Pablo Pinacho, Emilio J. Cocinero, Andrea Vázquez, Otger Crehuet
article en
1 citations

Abstract

Understanding the intrinsic shape of bioactive molecules such as picaridin is key to elucidating their mode of action. In this work, we characterize the gas-phase conformational landscape of picaridin, a flexible chiral repellent with two stereocenters. Broadband rotational spectroscopy combined with quantum chemical calculations reveals a single dominant conformer per enantiomeric pair, both stabilized by internal O-H⋯O hydrogen bonds. These intramolecular interactions induce conformational locking, constraining the hydroxyethyl chain and favouring a compact geometry. Non-covalent interaction analysis further confirms that dispersion and hydrogen bonding play a central role in conformational selection under isolated conditions.

Physical Chemistry Chemical PhysicsVol. 27(28)
Universidad de Valladolid (ES), University of the Basque Country (ES), Instituto Biofisika (ES), Fundación Biofísica Bizkaia (ES)
European Commission, Eusko Jaurlaritza, Euskal Herriko Unibertsitatea, Ministerio de Ciencia e Innovación, Agencia Estatal de Investigación
Life in Land
Openalex Percentile: Top 29%
Molecular Spectroscopy and Structure
0.76
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