Automated Selection of Nuclear Coordinates for Reduced Dimensionality Nonadiabatic Dynamics

Poor scaling of dynamics simulations with number of dimensions is currently a major limiting factor in the simulation of photochemical processes. In this work, we investigate ways to reduce the dimensionality of many-atom systems with a view toward enhancing computational efficiency while maintaining accuracy. Using mixed quantum-classical Trajectory Surface Hopping (TSH) simulations of three photoreactive molecules─<i>trans</i>-azomethane (tAZM), butyrolactone (Bulac), and furanone (Fur)─we explore two different dimensionality reduction techniques: Principal Component Analysis (PCA) and Normal Mode Variance (NMV). Dynamics simulations are run in full dimensionality and reduced dimensionality, employing either PCA or NMV, and the impact of the dimensionality reduction on selected electronic and geometric properties of the dynamics is evaluated. For all three molecules, both PCA and NMV can be used to select lower-dimensional spaces in which the full-dimensionality dynamics results are reproduced. PCA reduction outperforms NMV in all systems, allowing for a more significant dimensionality reduction without loss of accuracy. The improved accuracy of PCA is, for tAZM, mostly seen in the electronic properties while for both Fur and Bulac the advantage is clear in the ring-opening reaction itself as well. The present approach opens routes to simulation of larger photochemically relevant systems, through the use of automated dimensionality reduction, avoiding human bias.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2025-06-24
DOI
https://doi.org/10.1021/acs.jctc.5c00110
Primary Topic
Spectroscopy and Quantum Chemical Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Automated Selection of Nuclear Coordinates for Reduced Dimensionality Nonadiabatic Dynamics

Ignacio Fdez. Galván, Anthony Ferté, V. Delmas, Isabella C. D. Merritt et al.
23 links
Journal of Chemical Theory and Computation
Spectroscopy and Quantum Chemical Studies
article

Automated Selection of Nuclear Coordinates for Reduced Dimensionality Nonadiabatic Dynamics

Ignacio Fdez. Galván, Anthony Ferté, V. Delmas, Isabella C. D. Merritt, Morgane Vacher, Alessandro Nicola Nardi
article en

Abstract

Poor scaling of dynamics simulations with number of dimensions is currently a major limiting factor in the simulation of photochemical processes. In this work, we investigate ways to reduce the dimensionality of many-atom systems with a view toward enhancing computational efficiency while maintaining accuracy. Using mixed quantum-classical Trajectory Surface Hopping (TSH) simulations of three photoreactive molecules─<i>trans</i>-azomethane (tAZM), butyrolactone (Bulac), and furanone (Fur)─we explore two different dimensionality reduction techniques: Principal Component Analysis (PCA) and Normal Mode Variance (NMV). Dynamics simulations are run in full dimensionality and reduced dimensionality, employing either PCA or NMV, and the impact of the dimensionality reduction on selected electronic and geometric properties of the dynamics is evaluated. For all three molecules, both PCA and NMV can be used to select lower-dimensional spaces in which the full-dimensionality dynamics results are reproduced. PCA reduction outperforms NMV in all systems, allowing for a more significant dimensionality reduction without loss of accuracy. The improved accuracy of PCA is, for tAZM, mostly seen in the electronic properties while for both Fur and Bulac the advantage is clear in the ring-opening reaction itself as well. The present approach opens routes to simulation of larger photochemically relevant systems, through the use of automated dimensionality reduction, avoiding human bias.

Journal of Chemical Theory and ComputationVol. 21(13)
Uppsala University (SE), Centre National de la Recherche Scientifique (FR), Université de Bordeaux (FR), Institut des Sciences Moléculaires (FR), Chimie et Interdisciplinarité, Synthèse, Analyse, Modélisation (FR), Institut Polytechnique de Bordeaux (FR), Nantes Université (FR)
Université de Nantes, Conseil Régional des Pays de la Loire, European Research Council
Openalex Percentile: Top 89%
Spectroscopy and Quantum Chemical Studies
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