Vibrational Spectroscopic and Quantum-Chemical Study of Indole–Ketone Hydrogen-Bonded Complexes

This study investigates the structural and energetic properties of hydrogen-bonded complexes between indole and a range of aliphatic, cyclic, and aromatic ketones using a combined vibrational spectroscopic and quantum-chemical approach. FTIR measurements in CCl<sub>4</sub> revealed redshifts in the N-H stretching vibration of indole upon complexation, with formation constants (K<sub>a</sub>) ranging from 0.3 to 6.6 M<sup>-1</sup>. Cyclohexanone displayed the strongest binding, while benzophenone exhibited the weakest interaction. Quantum-chemical calculations, employing CREST and MMFF94 conformational sampling, along with M06-2X/6-311++G(d,p) optimizations, confirmed the formation of hydrogen bonds and additional weak interactions that govern the stability of the complex. QTAIM analysis revealed moderate closed-shell hydrogen bonds with electron densities at the bond critical points (ρ) ranging from 0.010 to 0.019 a.u. and potential energy densities (V) from -18.4 to -36.4 kJ mol<sup>-1</sup>. Multivariate regression analysis established strong correlations (R<sup>2</sup> = 0.928 and 0.957) between experimental binding constants and theoretical descriptors, including binding energy, NBO charge on oxygen atom, ionization potential, and electrophilicity index, highlighting the interplay between geometric, electronic, and global reactivity factors. This comprehensive study underlines the predictive power of spectroscopic and quantum descriptors for assessing hydrogen bonding in biologically relevant systems.

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Publication Details

Journal
Molecules
Published
2025-06-21
DOI
https://doi.org/10.3390/molecules30132685
Primary Topic
Crystallography and molecular interactions
Type
article
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article

Vibrational Spectroscopic and Quantum-Chemical Study of Indole–Ketone Hydrogen-Bonded Complexes

Branko Kordić, Branislav Jović, Dušan Dimić, Nataša Negru
Molecules
Crystallography and molecular interactions
article

Vibrational Spectroscopic and Quantum-Chemical Study of Indole–Ketone Hydrogen-Bonded Complexes

Branko Kordić, Branislav Jović, Dušan Dimić, Nataša Negru
article en

Abstract

This study investigates the structural and energetic properties of hydrogen-bonded complexes between indole and a range of aliphatic, cyclic, and aromatic ketones using a combined vibrational spectroscopic and quantum-chemical approach. FTIR measurements in CCl<sub>4</sub> revealed redshifts in the N-H stretching vibration of indole upon complexation, with formation constants (K<sub>a</sub>) ranging from 0.3 to 6.6 M<sup>-1</sup>. Cyclohexanone displayed the strongest binding, while benzophenone exhibited the weakest interaction. Quantum-chemical calculations, employing CREST and MMFF94 conformational sampling, along with M06-2X/6-311++G(d,p) optimizations, confirmed the formation of hydrogen bonds and additional weak interactions that govern the stability of the complex. QTAIM analysis revealed moderate closed-shell hydrogen bonds with electron densities at the bond critical points (ρ) ranging from 0.010 to 0.019 a.u. and potential energy densities (V) from -18.4 to -36.4 kJ mol<sup>-1</sup>. Multivariate regression analysis established strong correlations (R<sup>2</sup> = 0.928 and 0.957) between experimental binding constants and theoretical descriptors, including binding energy, NBO charge on oxygen atom, ionization potential, and electrophilicity index, highlighting the interplay between geometric, electronic, and global reactivity factors. This comprehensive study underlines the predictive power of spectroscopic and quantum descriptors for assessing hydrogen bonding in biologically relevant systems.

MoleculesVol. 30(13)
University of Novi Sad (RS), University of Belgrade (RS)
Affordable and clean energy
Openalex Percentile: Top 86%
Crystallography and molecular interactions
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