A Draft Genome Assembly for <i>Diaporthe humulicola</i> , the Causal Agent of Halo Blight of Hop

Diaporthe humulicola is the causal agent of halo blight in hop. Halo blight is a major concern in the Northeastern United States and Canada, capable of causing significant yield loss in hop yards. Although there are currently two genomes deposited in GenBank under the name “ Diaporthe humulicola,” a four-gene maximum likelihood phylogeny shows that this genome is not the same species as previously described D. humulicola isolates but is likely a novel species within the Diaporthe genus. In this study, we report a draft genome for D. humulicola that was assembled with both long- and short-read sequences. The draft genome consists of 49.82 megabases assembled into 180 contigs, with a GC content of 51.2%. The genome was annotated, and 11,773 genes were predicted, including 2,752 genes with common names. This paper represents the first genomic resource for D. humulicola. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

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Journal
PhytoFrontiers™
Published
2025-06-22
DOI
https://doi.org/10.1094/phytofr-02-25-0014-a
Primary Topic
Plant Pathogens and Fungal Diseases
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article
Field-Weighted Citation Impact
0.00

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article

A Draft Genome Assembly for Diaporthe humulicola , the Causal Agent of Halo Blight of Hop

Alejandro Rojas, Timothy D. Miles, Juanita Gil, Ross J. Hatlen
PhytoFrontiers™
Plant Pathogens and Fungal Diseases
article

A Draft Genome Assembly for Diaporthe humulicola , the Causal Agent of Halo Blight of Hop

Alejandro Rojas, Timothy D. Miles, Juanita Gil, Ross J. Hatlen
article en

Abstract

Diaporthe humulicola is the causal agent of halo blight in hop. Halo blight is a major concern in the Northeastern United States and Canada, capable of causing significant yield loss in hop yards. Although there are currently two genomes deposited in GenBank under the name “ Diaporthe humulicola,” a four-gene maximum likelihood phylogeny shows that this genome is not the same species as previously described D. humulicola isolates but is likely a novel species within the Diaporthe genus. In this study, we report a draft genome for D. humulicola that was assembled with both long- and short-read sequences. The draft genome consists of 49.82 megabases assembled into 180 contigs, with a GC content of 51.2%. The genome was annotated, and 11,773 genes were predicted, including 2,752 genes with common names. This paper represents the first genomic resource for D. humulicola. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

PhytoFrontiers™Vol. 5(4)
Michigan United (US), Michigan State University (US)
Michigan State University, College of Engineering, Michigan State University
Life in Land
Openalex Percentile: Top 85%
Plant Pathogens and Fungal Diseases
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A Draft Genome Assembly for <i>Diaporthe humulicola</i> , the Causal Agent of Halo Blight of Hop — Alejandro Rojas, Timothy D. Miles, et al. · PhytoFrontiers™ (2025) | TGRS Research Map | TGRS