BREAST CANCER PREDICTION FROM GENE EXPRESSION DATA USING RECURRENT NEURAL NETWORKS

Gene expression data holds significant potential for identifying biomarkers and predicting the progression of breast cancer. Despite advancements in machine learning, accurately predicting breast cancer from gene expression data remains a challenge due to high-dimensionality, noise, and feature correlation in datasets. This study proposes a hybrid Recurrent Neural Network (RNN) to enhance prediction accuracy. The RNN combines convolutional layers for feature extraction with recurrent layers to capture sequential dependencies inherent in gene expression data. The method begins by preprocessing the gene expression dataset through normalization and feature selection techniques to reduce dimensionality. The RNN model incorporates convolutional layers to extract spatial patterns and long short-term memory (LSTM) layers to capture temporal dependencies. Batch normalization, dropout, and adaptive optimizers are applied to prevent overfitting and improve convergence. Experimental evaluation using a publicly available breast cancer gene expression dataset demonstrates that the proposed RNN model outperforms existing methods, achieving an accuracy of 97.5%. Comparisons with Support Vector Machine (SVM), Random Forest (RF), and Deep Neural Networks (DNN) highlight the RNN''''s superiority in handling complex, high-dimensional data.

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Publication Details

Journal
ICTACT Journal on Data Science and Machine Learning
Published
2024-12-01
DOI
https://doi.org/10.21917/ijdsml.2024.0150
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
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article

BREAST CANCER PREDICTION FROM GENE EXPRESSION DATA USING RECURRENT NEURAL NETWORKS

Yash Katariya, Rao U
ICTACT Journal on Data Science and Machine Learning
AI in cancer detection
article

BREAST CANCER PREDICTION FROM GENE EXPRESSION DATA USING RECURRENT NEURAL NETWORKS

Yash Katariya, Rao U
article en

Abstract

Gene expression data holds significant potential for identifying biomarkers and predicting the progression of breast cancer. Despite advancements in machine learning, accurately predicting breast cancer from gene expression data remains a challenge due to high-dimensionality, noise, and feature correlation in datasets. This study proposes a hybrid Recurrent Neural Network (RNN) to enhance prediction accuracy. The RNN combines convolutional layers for feature extraction with recurrent layers to capture sequential dependencies inherent in gene expression data. The method begins by preprocessing the gene expression dataset through normalization and feature selection techniques to reduce dimensionality. The RNN model incorporates convolutional layers to extract spatial patterns and long short-term memory (LSTM) layers to capture temporal dependencies. Batch normalization, dropout, and adaptive optimizers are applied to prevent overfitting and improve convergence. Experimental evaluation using a publicly available breast cancer gene expression dataset demonstrates that the proposed RNN model outperforms existing methods, achieving an accuracy of 97.5%. Comparisons with Support Vector Machine (SVM), Random Forest (RF), and Deep Neural Networks (DNN) highlight the RNN''''s superiority in handling complex, high-dimensional data.

ICTACT Journal on Data Science and Machine LearningVol. 6(1)
Good health and well-being
Openalex Percentile: Top 72%
AI in cancer detection
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BREAST CANCER PREDICTION FROM GENE EXPRESSION DATA USING RECURRENT NEURAL NETWORKS — Yash Katariya, Rao U · ICTACT Journal on Data Science and Machine Learning (2024) | TGRS Research Map | TGRS