Unique structural features define the decarboxylation activity of a CYP152 fatty acid decarboxylase from Lacicoccus alkaliphilus

Cytochrome P450 CYP152s catalyze decarboxylation of fatty acids to generate terminal alkenes, valuable compounds for various industries. Here, we identified, overexpressed, and characterized a new CYP152 enzyme from Lacicoccus alkaliphilus (OleT<sub>LA</sub>) and compared its biophysical and biochemical properties with the well-studied OleT<sub>JE</sub> from Jeotgalicoccus sp. 8456. Improved expression protocols gave the highest yields of CYP152 holoenzymes reported to date. OleT<sub>LA</sub> exhibits twice the catalytic turnover number of OleT<sub>JE</sub> when using hexadecanoic acid and H<sub>2</sub>O<sub>2</sub> as substrates in 10% (v/v) ethanol (EtOH). The X-ray structure of OleT<sub>LA</sub> in complex with icosanoic acid revealed a unique flipped heme and a substrate tunnel configuration which are different than those of other CYP152 decarboxylases. Molecular dynamics simulations revealed that in the presence of EtOH, OleT<sub>LA</sub> displays structural dynamics which maintain structural interactions better than those of OleT<sub>JE</sub>. As I178 in OleT<sub>LA</sub> (equivalent to L176 in OleT<sub>JE</sub>) shows close interactions with its substrate during simulations, I178L of OleT<sub>LA</sub> and L176I of OleT<sub>JE</sub> variants were constructed and investigated for their activities. While L176I in OleT<sub>JE</sub> caused a significant loss of activity, I178L of OleT<sub>LA</sub> had activities that were equivalent to or greater than those of the wild-type enzyme, suggesting that overall scaffold of OleT<sub>LA</sub> is more amenable to mutation than OleT<sub>JE</sub>. Stopped-flow investigations of OleT<sub>LA</sub> reactions indicated that EtOH increases the rate constant of Compound I formation. We also identified a new redox partner system, ferredoxin and ferredoxin reductase that can function as effective electron donors for both in vitro and in vivo systems of CYP152s.

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Journal
Journal of Biological Chemistry
Published
2025-06-19
DOI
https://doi.org/10.1016/j.jbc.2025.110397
Citations
2
Primary Topic
Microbial Metabolic Engineering and Bioproduction
Type
article
Field-Weighted Citation Impact
1.61
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article

Unique structural features define the decarboxylation activity of a CYP152 fatty acid decarboxylase from Lacicoccus alkaliphilus

Pimchai Chaiyen, Narin Lawan, Genji Kurisu, Jeerus Sucharitakul et al.
2 citations
Journal of Biological Chemistry
Microbial Metabolic Engineering and Bioproduction
1.61
article

Unique structural features define the decarboxylation activity of a CYP152 fatty acid decarboxylase from Lacicoccus alkaliphilus

Pimchai Chaiyen, Narin Lawan, Genji Kurisu, Jeerus Sucharitakul, Suppalak Phaisan, Ailada Charoenpol, Pratchaya Watthaisong, Aisaraphon Phintha, Duangthip Trisrivirat, Hideaki Tanaka
article en
2 citations

Abstract

Cytochrome P450 CYP152s catalyze decarboxylation of fatty acids to generate terminal alkenes, valuable compounds for various industries. Here, we identified, overexpressed, and characterized a new CYP152 enzyme from Lacicoccus alkaliphilus (OleT<sub>LA</sub>) and compared its biophysical and biochemical properties with the well-studied OleT<sub>JE</sub> from Jeotgalicoccus sp. 8456. Improved expression protocols gave the highest yields of CYP152 holoenzymes reported to date. OleT<sub>LA</sub> exhibits twice the catalytic turnover number of OleT<sub>JE</sub> when using hexadecanoic acid and H<sub>2</sub>O<sub>2</sub> as substrates in 10% (v/v) ethanol (EtOH). The X-ray structure of OleT<sub>LA</sub> in complex with icosanoic acid revealed a unique flipped heme and a substrate tunnel configuration which are different than those of other CYP152 decarboxylases. Molecular dynamics simulations revealed that in the presence of EtOH, OleT<sub>LA</sub> displays structural dynamics which maintain structural interactions better than those of OleT<sub>JE</sub>. As I178 in OleT<sub>LA</sub> (equivalent to L176 in OleT<sub>JE</sub>) shows close interactions with its substrate during simulations, I178L of OleT<sub>LA</sub> and L176I of OleT<sub>JE</sub> variants were constructed and investigated for their activities. While L176I in OleT<sub>JE</sub> caused a significant loss of activity, I178L of OleT<sub>LA</sub> had activities that were equivalent to or greater than those of the wild-type enzyme, suggesting that overall scaffold of OleT<sub>LA</sub> is more amenable to mutation than OleT<sub>JE</sub>. Stopped-flow investigations of OleT<sub>LA</sub> reactions indicated that EtOH increases the rate constant of Compound I formation. We also identified a new redox partner system, ferredoxin and ferredoxin reductase that can function as effective electron donors for both in vitro and in vivo systems of CYP152s.

Journal of Biological ChemistryVol. 301(7)
Chulalongkorn University (TH), Technopolis (Finland) (FI), KAN Research Institute (JP), Protein Research Foundation (JP), Vidyasirimedhi Institute of Science and Technology (TH), Chiang Mai University (TH), The University of Osaka (JP)
Openalex Percentile: Top 16%
Microbial Metabolic Engineering and Bioproduction
1.61
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