Second-Sphere Interaction Allows Selective Reduction of Nitrite to NO or Ammonia by Synthetic Iron Porphyrins

Heme nitrite reductases (NiRs) are key enzymes in the assimilatory and dissimilatory reduction of nitrite (NO<sub>2</sub><sup>-</sup>) by 6e<sup>-</sup>/8H<sup>+</sup> to NH<sub>4</sub><sup>+</sup> and by 1e<sup>-</sup>/2H<sup>+</sup> to NO during denitrification in the global nitrogen cycle. The different heme cofactors in different NiRs are flanked by highly conserved second-sphere basic residues in their active sites, e.g., histidine, lysine, and arginine. Biochemical and computational investigations have indicated that these basic residues offer hydrogen bond stabilization and provide protons to the intermediate species formed during NO<sub>2</sub><sup>-</sup> reduction. Iron porphyrins with one or two pendent pyridines, mimicking the basic residues in the active site of NiRs, are synthesized, and their electrochemical NO<sub>2</sub><sup>-</sup> reduction is investigated. The second-sphere hydrogen bonding residues allow the iron porphyrin with two pendent pyridines to successfully emulate the reactivity of cytochrome <i>c</i> NiR, where it can generate >95% NO (1e<sup>-</sup>/2H<sup>+</sup>) at high potentials and >75% NH<sub>4</sub><sup>+</sup> (6e<sup>-</sup>/8H<sup>+</sup>), rest being NO, at lower potentials without releasing any other partially reduced species. These pendent pyridines stabilize the NO<sub>2</sub><sup>-</sup> binding and very selective reduction of NO<sub>2</sub><sup>-</sup> to either NO or NH<sub>4</sub><sup>+</sup> in the presence of a modest proton donor. While the reduction to NO can be satisfactorily achieved using one basic group in the second sphere, the 6e<sup>-</sup>/8H<sup>+</sup> reduction to NH<sub>4</sub><sup>+</sup> can be achieved satisfactorily only when two such basic groups are present. The quantitative understanding of the roles played by these basic residues in these reactions, obtained from these functional synthetic models, highlights the importance of these basic residues in multiproton multielectron reduction reactions in nature.

Authors

Institutions

Publication Details

Journal
Journal of the American Chemical Society
Published
2025-06-19
DOI
https://doi.org/10.1021/jacs.5c06960
Citations
7
Primary Topic
Ammonia Synthesis and Nitrogen Reduction
Type
article
Field-Weighted Citation Impact
2.72

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Second-Sphere Interaction Allows Selective Reduction of Nitrite to NO or Ammonia by Synthetic Iron Porphyrins

Sudip Barman, Abhishek Dey, Paramita Saha
7 citations
Journal of the American Chemical Society
Ammonia Synthesis and Nitrogen Reduction
2.72
article

Second-Sphere Interaction Allows Selective Reduction of Nitrite to NO or Ammonia by Synthetic Iron Porphyrins

Sudip Barman, Abhishek Dey, Paramita Saha
article en
7 citations

Abstract

Heme nitrite reductases (NiRs) are key enzymes in the assimilatory and dissimilatory reduction of nitrite (NO<sub>2</sub><sup>-</sup>) by 6e<sup>-</sup>/8H<sup>+</sup> to NH<sub>4</sub><sup>+</sup> and by 1e<sup>-</sup>/2H<sup>+</sup> to NO during denitrification in the global nitrogen cycle. The different heme cofactors in different NiRs are flanked by highly conserved second-sphere basic residues in their active sites, e.g., histidine, lysine, and arginine. Biochemical and computational investigations have indicated that these basic residues offer hydrogen bond stabilization and provide protons to the intermediate species formed during NO<sub>2</sub><sup>-</sup> reduction. Iron porphyrins with one or two pendent pyridines, mimicking the basic residues in the active site of NiRs, are synthesized, and their electrochemical NO<sub>2</sub><sup>-</sup> reduction is investigated. The second-sphere hydrogen bonding residues allow the iron porphyrin with two pendent pyridines to successfully emulate the reactivity of cytochrome <i>c</i> NiR, where it can generate >95% NO (1e<sup>-</sup>/2H<sup>+</sup>) at high potentials and >75% NH<sub>4</sub><sup>+</sup> (6e<sup>-</sup>/8H<sup>+</sup>), rest being NO, at lower potentials without releasing any other partially reduced species. These pendent pyridines stabilize the NO<sub>2</sub><sup>-</sup> binding and very selective reduction of NO<sub>2</sub><sup>-</sup> to either NO or NH<sub>4</sub><sup>+</sup> in the presence of a modest proton donor. While the reduction to NO can be satisfactorily achieved using one basic group in the second sphere, the 6e<sup>-</sup>/8H<sup>+</sup> reduction to NH<sub>4</sub><sup>+</sup> can be achieved satisfactorily only when two such basic groups are present. The quantitative understanding of the roles played by these basic residues in these reactions, obtained from these functional synthetic models, highlights the importance of these basic residues in multiproton multielectron reduction reactions in nature.

Journal of the American Chemical SocietyVol. 147(26)
Indian Association for the Cultivation of Science (IN)
Council of Scientific and Industrial Research, India, University Grants Commission, Science and Engineering Research Board
Openalex Percentile: Top 9%
Ammonia Synthesis and Nitrogen Reduction
2.72
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.