Graphically Defined Model Reactions Are Extensible, Accurate, and Systematically Improvable

Achieving fast and accurate reaction prediction is central to a suite of chemical applications. Nevertheless, classic approaches based on templates or simple models are typically fast but with limited scope or accuracy, while the emerging machine learning-based models are limited in their transferability due to the lack of large reaction databases. Here, we address these limitations by formalizing the model reaction concept based on fixed-depth condensed reaction graphs that are shown to achieve a cost and accuracy balance that is applicable to many problems. The model reaction concept can be utilized to provide reliable predictions of activation energies and transition state geometries for a large range of organic reactions. In addition, using an alkane pyrolysis system as a benchmarking example, we show that the accuracy of the activation energy prediction can be further improved by adding correction terms based on the empirical Brønsted-Evans-Polanyi (BEP) relationship. These successful applications demonstrate that the model reaction can serve as a general tool to reduce the cost associated with ab initio transition state searches.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2025-06-18
DOI
https://doi.org/10.1021/acs.jctc.5c00279
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00

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article

Graphically Defined Model Reactions Are Extensible, Accurate, and Systematically Improvable

Brett Matthew Savoie, Qiyuan Zhao, Veerupaksh Singla, Hsuan‐Hao Hsu
Journal of Chemical Theory and Computation
Machine Learning in Materials Science
article

Graphically Defined Model Reactions Are Extensible, Accurate, and Systematically Improvable

Brett Matthew Savoie, Qiyuan Zhao, Veerupaksh Singla, Hsuan‐Hao Hsu
article en

Abstract

Achieving fast and accurate reaction prediction is central to a suite of chemical applications. Nevertheless, classic approaches based on templates or simple models are typically fast but with limited scope or accuracy, while the emerging machine learning-based models are limited in their transferability due to the lack of large reaction databases. Here, we address these limitations by formalizing the model reaction concept based on fixed-depth condensed reaction graphs that are shown to achieve a cost and accuracy balance that is applicable to many problems. The model reaction concept can be utilized to provide reliable predictions of activation energies and transition state geometries for a large range of organic reactions. In addition, using an alkane pyrolysis system as a benchmarking example, we show that the accuracy of the activation energy prediction can be further improved by adding correction terms based on the empirical Brønsted-Evans-Polanyi (BEP) relationship. These successful applications demonstrate that the model reaction can serve as a general tool to reduce the cost associated with ab initio transition state searches.

Journal of Chemical Theory and ComputationVol. 21(13)
University of Notre Dame (US), Davidson College (US), Purdue University West Lafayette (US)
Camille and Henry Dreyfus Foundation, Purdue University, Office of Naval Research
Openalex Percentile: Top 90%
Machine Learning in Materials Science
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Graphically Defined Model Reactions Are Extensible, Accurate, and Systematically Improvable — Brett Matthew Savoie, Qiyuan Zhao, et al. · Journal of Chemical Theory and Computation (2025) | TGRS Research Map | TGRS