Machine learning short-ranged many-body interactions in colloidal systems using descriptors based on Voronoi cells

Machine learning (ML) strategies are opening the door to faster computer simulations, allowing us to simulate more realistic colloidal systems. Since the interactions in colloidal systems are often highly many-body, stemming from, e.g., depletion and steric interactions, one of the challenges for these algorithms is capturing the many-body nature of these interactions. In this paper, we introduce a new ML-based strategy for fitting many-body interactions in colloidal systems where the many-body interaction is highly local. To this end, we develop Voronoi-based descriptors for capturing the local environment and fit the effective potential using a simple neural network. To test this algorithm, we consider a simple two-dimensional model for a colloid-polymer mixture, where the colloid-colloid interactions and colloid-polymer interactions are hard-disk like, while the polymers themselves interact as ideal gas particles. We find that a Voronoi-based description is sufficient to accurately capture the many-body nature of this system. Moreover, we find that the Pearson correlation function alone is insufficient to determine the predictive power of the network emphasizing the importance of additional metrics when assessing the quality of ML-based potentials.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2025-06-18
DOI
https://doi.org/10.1063/5.0267835
Primary Topic
Machine Learning in Materials Science
Type
article
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article

Machine learning short-ranged many-body interactions in colloidal systems using descriptors based on Voronoi cells

Rinske M. Alkemade, Frank Smallenburg, Rastko Sknepnek, Laura Filion
The Journal of Chemical Physics
Machine Learning in Materials Science
article

Machine learning short-ranged many-body interactions in colloidal systems using descriptors based on Voronoi cells

Rinske M. Alkemade, Frank Smallenburg, Rastko Sknepnek, Laura Filion
article en

Abstract

Machine learning (ML) strategies are opening the door to faster computer simulations, allowing us to simulate more realistic colloidal systems. Since the interactions in colloidal systems are often highly many-body, stemming from, e.g., depletion and steric interactions, one of the challenges for these algorithms is capturing the many-body nature of these interactions. In this paper, we introduce a new ML-based strategy for fitting many-body interactions in colloidal systems where the many-body interaction is highly local. To this end, we develop Voronoi-based descriptors for capturing the local environment and fit the effective potential using a simple neural network. To test this algorithm, we consider a simple two-dimensional model for a colloid-polymer mixture, where the colloid-colloid interactions and colloid-polymer interactions are hard-disk like, while the polymers themselves interact as ideal gas particles. We find that a Voronoi-based description is sufficient to accurately capture the many-body nature of this system. Moreover, we find that the Pearson correlation function alone is insufficient to determine the predictive power of the network emphasizing the importance of additional metrics when assessing the quality of ML-based potentials.

The Journal of Chemical PhysicsVol. 162(23)
Centre National de la Recherche Scientifique (FR), University of Dundee (GB), Utrecht University (NL), Université Paris-Saclay (FR), Laboratoire de physique des Solides (FR)
Openalex Percentile: Top 90%
Machine Learning in Materials Science
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Machine learning short-ranged many-body interactions in colloidal systems using descriptors based on Voronoi cells — Rinske M. Alkemade, Frank Smallenburg, et al. · The Journal of Chemical Physics (2025) | TGRS Research Map | TGRS