A Tn5 Transposase-Based System for High-Efficiency Genome-Wide Gene Activation in <i>Escherichia coli</i>

Deciphering gene function to understand the genetic basis of microbial phenotypes in a high-throughput manner is crucial for bacterial engineering. However, efficient tools for generating genome-wide gene activation mutant libraries to enable gain-of-function analyses remain limited. Here, we developed a Tn5 transposase-based system for efficient genome-wide gene activation in <i>Escherichia coli</i>. The cargo DNA incorporated a tetracycline-inducible promoter Ptet and a kanamycin resistance gene, enabling selective growth and conditional gene activation. The system achieved near-random integration with an insertion frequency of approximately 2.83 × 10<sup>7</sup> cfu/μg DNA. Both in vitro and in vivo transposition results demonstrated the effective activation of specific and nonspecific genes. Using this system, we identified three putative transporters that, despite being unrelated to glycine export, significantly enhanced glycine resistance in <i>E. coli</i>. These results highlight the utility of this method for genotype-phenotype mapping and strain optimization, offering a powerful tool for synthetic biology and functional genomics.

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Publication Details

Journal
ACS Synthetic Biology
Published
2025-06-17
DOI
https://doi.org/10.1021/acssynbio.5c00170
Primary Topic
CRISPR and Genetic Engineering
Type
article
Field-Weighted Citation Impact
0.00

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article

A Tn5 Transposase-Based System for High-Efficiency Genome-Wide Gene Activation in Escherichia coli

Zhe Sun, Lei Chen, Yifei Liu, Yuling Song et al.
ACS Synthetic Biology
CRISPR and Genetic Engineering
article

A Tn5 Transposase-Based System for High-Efficiency Genome-Wide Gene Activation in Escherichia coli

Zhe Sun, Lei Chen, Yifei Liu, Yuling Song, Qingyan Li, Xueli Zhang
article en

Abstract

Deciphering gene function to understand the genetic basis of microbial phenotypes in a high-throughput manner is crucial for bacterial engineering. However, efficient tools for generating genome-wide gene activation mutant libraries to enable gain-of-function analyses remain limited. Here, we developed a Tn5 transposase-based system for efficient genome-wide gene activation in <i>Escherichia coli</i>. The cargo DNA incorporated a tetracycline-inducible promoter Ptet and a kanamycin resistance gene, enabling selective growth and conditional gene activation. The system achieved near-random integration with an insertion frequency of approximately 2.83 × 10<sup>7</sup> cfu/μg DNA. Both in vitro and in vivo transposition results demonstrated the effective activation of specific and nonspecific genes. Using this system, we identified three putative transporters that, despite being unrelated to glycine export, significantly enhanced glycine resistance in <i>E. coli</i>. These results highlight the utility of this method for genotype-phenotype mapping and strain optimization, offering a powerful tool for synthetic biology and functional genomics.

ACS Synthetic BiologyVol. 14(7)
Tianjin University (CN), Chinese Academy of Sciences (CN), Intelligent Synthetic Biology Center (KR), National Institute of Clean and Low-Carbon Energy (CN), State Key Laboratory of Synthetic Chemistry (CN), Tianjin Institute of Industrial Biotechnology (CN), University of Chinese Academy of Sciences (CN)
National Natural Science Foundation of China, Chinese Academy of Sciences
Openalex Percentile: Top 87%
CRISPR and Genetic Engineering
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