Impact of a single 8-oxoguanine lesion on Watson–Crick and Hoogsteen base pair hybridization in telomeric DNA quantified using single-molecule force spectroscopy

8-Oxoguanine (8-oxoG) is a common DNA oxidative lesion prevalent in telomeric regions. However, the impact of 8-oxoG modification on the Watson-Crick base pairing energy remains controversial, potentially due to the formation of partially folded intermediates. Here, we used single-molecule magnetic tweezers to characterize the mechanical stability and equilibrium folding/unfolding transitions of human telomeric hairpins containing a single 8-oxoG lesion at different positions. Our results reveal that fully folded hairpins with a centrally located 8-oxoG exhibit similar hybridization energy (ΔΔG ∼ 1 kBT) and folding/unfolding rates to the wild type. This provides valuable data for refining the energy contribution of 8-oxoG-C base pair. In contrast, a single 8-oxoG lesion near the unzipping termini (5'-end or 3'-end) significantly enhances end fraying and hinders the complete folding of the hairpin under force. A 5'-end 8-oxoG lesion increased the unfolding rates by a 130-fold compared to the wild type at 10.1 pN. These findings provide insights into the unzipping dynamics of DNA duplexes containing 8-oxoG lesions at replication and transcription forks. Furthermore, we observed that an 8-oxoG at 5'-end of telomeric G-quadruplexes (G4s) significantly decreases folding rates and folding free energy (from 5.9 kBT to 2.3 kBT), shedding light on the dynamics of G4s under oxidative stress.

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Publication Details

Journal
Nucleic Acids Research
Published
2025-06-06
DOI
https://doi.org/10.1093/nar/gkaf508
Citations
2
Primary Topic
DNA and Nucleic Acid Chemistry
Type
article
Field-Weighted Citation Impact
1.61

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article

Impact of a single 8-oxoguanine lesion on Watson–Crick and Hoogsteen base pair hybridization in telomeric DNA quantified using single-molecule force spectroscopy

Yashuo Zhang, Yuanlei Cheng, Huijuan You, Xuyang Yang et al.
2 citations
Nucleic Acids Research
DNA and Nucleic Acid Chemistry
1.61
article

Impact of a single 8-oxoguanine lesion on Watson–Crick and Hoogsteen base pair hybridization in telomeric DNA quantified using single-molecule force spectroscopy

Yashuo Zhang, Yuanlei Cheng, Huijuan You, Xuyang Yang, Ximin Wang
article en
2 citations

Abstract

8-Oxoguanine (8-oxoG) is a common DNA oxidative lesion prevalent in telomeric regions. However, the impact of 8-oxoG modification on the Watson-Crick base pairing energy remains controversial, potentially due to the formation of partially folded intermediates. Here, we used single-molecule magnetic tweezers to characterize the mechanical stability and equilibrium folding/unfolding transitions of human telomeric hairpins containing a single 8-oxoG lesion at different positions. Our results reveal that fully folded hairpins with a centrally located 8-oxoG exhibit similar hybridization energy (ΔΔG ∼ 1 kBT) and folding/unfolding rates to the wild type. This provides valuable data for refining the energy contribution of 8-oxoG-C base pair. In contrast, a single 8-oxoG lesion near the unzipping termini (5'-end or 3'-end) significantly enhances end fraying and hinders the complete folding of the hairpin under force. A 5'-end 8-oxoG lesion increased the unfolding rates by a 130-fold compared to the wild type at 10.1 pN. These findings provide insights into the unzipping dynamics of DNA duplexes containing 8-oxoG lesions at replication and transcription forks. Furthermore, we observed that an 8-oxoG at 5'-end of telomeric G-quadruplexes (G4s) significantly decreases folding rates and folding free energy (from 5.9 kBT to 2.3 kBT), shedding light on the dynamics of G4s under oxidative stress.

Nucleic Acids ResearchVol. 53(11)
Central Hospital of Wuhan (CN), Huazhong University of Science and Technology (CN)
National Natural Science Foundation of China
Affordable and clean energy
Openalex Percentile: Top 17%
DNA and Nucleic Acid Chemistry
1.61
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Impact of a single 8-oxoguanine lesion on Watson–Crick and Hoogsteen base pair hybridization in telomeric DNA quantified using single-molecule force spectroscopy — Yashuo Zhang, Yuanlei Cheng, et al. · Nucleic Acids Research (2025) | TGRS Research Map | TGRS