Next-generation sequencing-based tools or nanopore-based tools: which is more suitable for short tandem repeats genotyping of nanopore sequencing?
NASTRA, STRspy, STRinNGS and STRait Razor, which can be accessed via the following links: https://github.com/renzilin/NASTRA, https://github.com/unique379r/strspy, https://bitbucket.org/rirgabiss/strinngs/src/master, and https://github.com/Ahhgust/STRaitRazor, respectively. The commands during process are provided as requested by the corresponding author.
Authors
- Wei Han (ORCID: https://orcid.org/0000-0003-0033-1486)
- Xuemei Zhang (ORCID: https://orcid.org/0000-0002-0326-9262)
- Zhe Zhou (ORCID: https://orcid.org/0000-0003-4616-0467)
- Qingzhen Zhang (ORCID: https://orcid.org/0000-0002-7968-3523)
Institutions
- Chinese Academy of Sciences (CN)
- Czech Academy of Sciences, Institute of Biophysics (CZ)
- Institute of Bioinformatics (IN)
Publication Details
- Journal
- Bioinformatics Advances
- Published
- 2024-12-26
- DOI
- https://doi.org/10.1093/bioadv/vbaf119
- Citations
- 2
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.47