Understanding Dynamics of Nanocluster–Organic Frameworks and Gas Diffusion from Machine Learning Potential-Based Simulations

Nanocluster-organic frameworks (NOFs) are emerging materials with broad applications in sensing, photocatalysis, and optoelectronics. These photofunctional materials have an excellent luminescence switching response to gases, such as oxygen (O<sub>2</sub>) and volatile organic compounds. However, their atomistic structural evolution and the mechanism governing the diffusion of small molecules inside them remain elusive. In this study, we developed machine learning potentials to accurately model an experimentally synthesized NOF, [Ag<sub>12</sub>(S<sup><i>t</i></sup>Bu)<sub>8</sub>(CF<sub>3</sub>COO)<sub>4</sub>(bpy)<sub>4</sub>)]<sub><i>n</i></sub>, and we investigated its structure and dynamics using molecular dynamics simulations. Furthermore, we used on-the-fly probability-enhanced sampling simulations to study O<sub>2</sub> gas diffusion inside NOF pores and construct the free energy surface. The O<sub>2</sub> gas predominantly localizes around the bipyridine linker, consistent with previous experimental observations. The pore-to-pore diffusion barrier of ∼16-18 kJ/mol for O<sub>2</sub> suggests feasible diffusion of the O<sub>2</sub> at room temperature. This work presents the first-ever integrated approach for modeling a fully flexible NOF and gas diffusion within it with DFT-level accuracy.

Authors

Institutions

Publication Details

Journal
Nano Letters
Published
2025-06-13
DOI
https://doi.org/10.1021/acs.nanolett.5c02218
Citations
2
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
1.04

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Understanding Dynamics of Nanocluster–Organic Frameworks and Gas Diffusion from Machine Learning Potential-Based Simulations

Tarak Karmakar, Dhananjay, Animesh Karmakar
2 citations
Nano Letters
Machine Learning in Materials Science
1.04
article

Understanding Dynamics of Nanocluster–Organic Frameworks and Gas Diffusion from Machine Learning Potential-Based Simulations

Tarak Karmakar, Dhananjay, Animesh Karmakar
article en
2 citations

Abstract

Nanocluster-organic frameworks (NOFs) are emerging materials with broad applications in sensing, photocatalysis, and optoelectronics. These photofunctional materials have an excellent luminescence switching response to gases, such as oxygen (O<sub>2</sub>) and volatile organic compounds. However, their atomistic structural evolution and the mechanism governing the diffusion of small molecules inside them remain elusive. In this study, we developed machine learning potentials to accurately model an experimentally synthesized NOF, [Ag<sub>12</sub>(S<sup><i>t</i></sup>Bu)<sub>8</sub>(CF<sub>3</sub>COO)<sub>4</sub>(bpy)<sub>4</sub>)]<sub><i>n</i></sub>, and we investigated its structure and dynamics using molecular dynamics simulations. Furthermore, we used on-the-fly probability-enhanced sampling simulations to study O<sub>2</sub> gas diffusion inside NOF pores and construct the free energy surface. The O<sub>2</sub> gas predominantly localizes around the bipyridine linker, consistent with previous experimental observations. The pore-to-pore diffusion barrier of ∼16-18 kJ/mol for O<sub>2</sub> suggests feasible diffusion of the O<sub>2</sub> at room temperature. This work presents the first-ever integrated approach for modeling a fully flexible NOF and gas diffusion within it with DFT-level accuracy.

Nano LettersVol. 25(25)
Indian Institute of Technology Delhi (IN)
Ministry of Education, India, Indian Institute of Technology Delhi
Openalex Percentile: Top 25%
Machine Learning in Materials Science
1.04
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Understanding Dynamics of Nanocluster–Organic Frameworks and Gas Diffusion from Machine Learning Potential-Based Simulations — Tarak Karmakar, Dhananjay, et al. · Nano Letters (2025) | TGRS Research Map | TGRS