Abstract 1743 Nanopore sequencing of intact aminoacylated tRNAs

Transfer RNAs (tRNA) are decorated during biogenesis with a variety of modifications that modulate their stability, aminoacylation, and decoding potential during translation. The complex landscape of tRNA modification presents significant analysis challenges and to date no single approach enables the simultaneous measurement of important but disparate chemical properties of individual, mature tRNA molecules. We developed a new, integrated approach to analyze the sequence, modification, and aminoacylation state of tRNA molecules in a high throughput nanopore sequencing experiment, leveraging a chemical ligation that embeds the charged amino acid in an adapted tRNA molecule.

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Publication Details

Journal
Journal of Biological Chemistry
Published
2025-05-01
DOI
https://doi.org/10.1016/j.jbc.2025.109750
Primary Topic
RNA modifications and cancer
Type
article
Field-Weighted Citation Impact
0.00

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article

Abstract 1743 Nanopore sequencing of intact aminoacylated tRNAs

Aleksandar Radakovic, Laura White, Jack W. Szostak, Jay R. Hesselberth et al.
Journal of Biological Chemistry
RNA modifications and cancer
article

Abstract 1743 Nanopore sequencing of intact aminoacylated tRNAs

Aleksandar Radakovic, Laura White, Jack W. Szostak, Jay R. Hesselberth, Marcin Piotr Sajek, Kezia Dobson
article en

Abstract

Transfer RNAs (tRNA) are decorated during biogenesis with a variety of modifications that modulate their stability, aminoacylation, and decoding potential during translation. The complex landscape of tRNA modification presents significant analysis challenges and to date no single approach enables the simultaneous measurement of important but disparate chemical properties of individual, mature tRNA molecules. We developed a new, integrated approach to analyze the sequence, modification, and aminoacylation state of tRNA molecules in a high throughput nanopore sequencing experiment, leveraging a chemical ligation that embeds the charged amino acid in an adapted tRNA molecule.

Journal of Biological ChemistryVol. 301(5)
University School of Milwaukee (US), University of Wisconsin–Milwaukee (US)
National Institutes of Health
Zero hunger
Openalex Percentile: Top 88%
RNA modifications and cancer
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Abstract 1743 Nanopore sequencing of intact aminoacylated tRNAs — Aleksandar Radakovic, Laura White, et al. · Journal of Biological Chemistry (2025) | TGRS Research Map | TGRS