Abstract 2452 BITFAM 2.0: Decoding Transcription Factor Activity with an Improved Bayesian Model to Identify Cell Type-Specific Regulators of Gene Expression

Transcription factors (TFs) are pivotal regulators of gene expression, orchestrating cellular processes, development, and disease progression. Studying TF activity at the cellular level offers profound mechanistic insights into these biological processes. We developed a biologically informed Bayesian inference transcription factor activity model (BITFAM), designed to predict the TF activity in individual cells by decomposing observed log-transformed, normalized transcriptional profiles into the product of TF activity and associated regulatory weights.

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Publication Details

Journal
Journal of Biological Chemistry
Published
2025-05-01
DOI
https://doi.org/10.1016/j.jbc.2025.109295
Primary Topic
Gene expression and cancer classification
Type
article
Field-Weighted Citation Impact
0.00

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article

Abstract 2452 BITFAM 2.0: Decoding Transcription Factor Activity with an Improved Bayesian Model to Identify Cell Type-Specific Regulators of Gene Expression

Yang David Dai, Mark A. Sanborn, Jalees Rehman, Varsha Sreekanth
Journal of Biological Chemistry
Gene expression and cancer classification
article

Abstract 2452 BITFAM 2.0: Decoding Transcription Factor Activity with an Improved Bayesian Model to Identify Cell Type-Specific Regulators of Gene Expression

Yang David Dai, Mark A. Sanborn, Jalees Rehman, Varsha Sreekanth
article en

Abstract

Transcription factors (TFs) are pivotal regulators of gene expression, orchestrating cellular processes, development, and disease progression. Studying TF activity at the cellular level offers profound mechanistic insights into these biological processes. We developed a biologically informed Bayesian inference transcription factor activity model (BITFAM), designed to predict the TF activity in individual cells by decomposing observed log-transformed, normalized transcriptional profiles into the product of TF activity and associated regulatory weights.

Journal of Biological ChemistryVol. 301(5)
University of Illinois Chicago (US)
National Institutes of Health, National Center for Advancing Translational Sciences
Zero hunger
Openalex Percentile: Top 88%
Gene expression and cancer classification
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Abstract 2452 BITFAM 2.0: Decoding Transcription Factor Activity with an Improved Bayesian Model to Identify Cell Type-Specific Regulators of Gene Expression — Yang David Dai, Mark A. Sanborn, et al. · Journal of Biological Chemistry (2025) | TGRS Research Map | TGRS