Abstract 1810 Using Galaxy to Analyze Soil and Sourdough DNA Sequencing Data

Galaxy is an online, open-source, web-based platform for bioinformatics analysis. It can run softwares such as Mothur, useful for analyzing DNA sequencing data. DNA from soil and sourdough samples was collected and sent for next generation sequencing (NGS) of the V3 and V4 variable regions of the 16S rRNA gene to determine the bacteria in the samples. The sequencing data was analyzed and converted into a histogram by the same company that sequenced it. However, the company's (Azenta) analysis included lots of ‘unknown' sequences and a suboptimal visualization.

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Publication Details

Journal
Journal of Biological Chemistry
Published
2025-05-01
DOI
https://doi.org/10.1016/j.jbc.2025.108977
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
0.00
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article

Abstract 1810 Using Galaxy to Analyze Soil and Sourdough DNA Sequencing Data

Laura J. Moore, Peter Soutsos
Journal of Biological Chemistry
Environmental DNA in Biodiversity Studies
article

Abstract 1810 Using Galaxy to Analyze Soil and Sourdough DNA Sequencing Data

Laura J. Moore, Peter Soutsos
article en

Abstract

Galaxy is an online, open-source, web-based platform for bioinformatics analysis. It can run softwares such as Mothur, useful for analyzing DNA sequencing data. DNA from soil and sourdough samples was collected and sent for next generation sequencing (NGS) of the V3 and V4 variable regions of the 16S rRNA gene to determine the bacteria in the samples. The sequencing data was analyzed and converted into a histogram by the same company that sequenced it. However, the company's (Azenta) analysis included lots of ‘unknown' sequences and a suboptimal visualization.

Journal of Biological ChemistryVol. 301(5)
Rochester Institute of Technology (US)
Zero hunger
Openalex Percentile: Top 86%
Environmental DNA in Biodiversity Studies
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