Environmental <scp>DNA</scp> (<scp>eDNA</scp>) Quantitative Polymerase Chain Reaction‐Based Assays for Surveying 125 Taxa of Importance to North America

ABSTRACT Timely and accurate assessment of the presence of at‐risk or invasive species is critical for effective responses to climate change and human impacts. For example, at‐risk species are often difficult to find, while invasive species are often well established before their infiltration is detected using conventional surveying methods. However, all organisms release genetic material such as DNA into their surroundings, leaving traces of themselves that can be detected using environmental DNA (eDNA) methods. These approaches are powerful tools in the conservation toolbox, as they are transforming how risk assessments and the evaluation of mitigation and remediation effectiveness are done. Despite this, poorly performing tools hinder broad adoption of eDNA‐based detection methods, due in part to their associated high false negatives and false positives that can impair effective management decision‐making. iTrackDNA is a multi‐year, large‐scale applied research project that is addressing these concerns with researchers and end users from various sectors across North America. It is building end‐user capacity through innovative, accessible, socially responsible genomics‐based analytical eDNA tools for effective decision‐making by publishing 125 quantitative real‐time polymerase chain reaction (qPCR) primer/probe sets designed to detect key invertebrates, fish, amphibians, birds, reptiles, and mammals in coastal and inland ecosystems important to North America, with an emphasis on Canada. These 125 assays were designed to meet or exceed the new Canadian Standards Association (CSA) consensus‐based and multi‐stakeholder national standards for eDNA (CSA W214:21 and CSA W219:23). Herein, we describe how we applied eDNA assay design and validation approaches across a wide range of animal taxa to achieve compliance.

Authors

Institutions

Publication Details

Journal
Environmental DNA
Published
2025-05-01
DOI
https://doi.org/10.1002/edn3.70139
Citations
11
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
18.88

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Environmental DNA (eDNA) Quantitative Polymerase Chain Reaction‐Based Assays for Surveying 125 Taxa of Importance to North America

Neha Acharya‐Patel, Tuan Anh To, İnanç Birol, Michael J. Allison et al.
11 citations
Environmental DNA
Environmental DNA in Biodiversity Studies
18.88
article

Environmental DNA (eDNA) Quantitative Polymerase Chain Reaction‐Based Assays for Surveying 125 Taxa of Importance to North America

Neha Acharya‐Patel, Tuan Anh To, İnanç Birol, Michael J. Allison, Mark Louie D. Lopez, Jacob J. Imbery, Lauren Coombe, Julie Couillard, Hajeong Lee, Lauren C. Bergman, Marie‐Pier Brochu, Valérie S. Langlois, Caren C. Helbing, Gaibor Gonzales Mariela Isabel, Matthew Bonderud, Emma T. Groenwold, Cecilia L. Yang, Yan Ren, René L. Warren, Anna H. Dema, Marie‐Lee Castonguay, Graeme K. Knowles, Fidji Sandré
article en
11 citations

Abstract

ABSTRACT Timely and accurate assessment of the presence of at‐risk or invasive species is critical for effective responses to climate change and human impacts. For example, at‐risk species are often difficult to find, while invasive species are often well established before their infiltration is detected using conventional surveying methods. However, all organisms release genetic material such as DNA into their surroundings, leaving traces of themselves that can be detected using environmental DNA (eDNA) methods. These approaches are powerful tools in the conservation toolbox, as they are transforming how risk assessments and the evaluation of mitigation and remediation effectiveness are done. Despite this, poorly performing tools hinder broad adoption of eDNA‐based detection methods, due in part to their associated high false negatives and false positives that can impair effective management decision‐making. iTrackDNA is a multi‐year, large‐scale applied research project that is addressing these concerns with researchers and end users from various sectors across North America. It is building end‐user capacity through innovative, accessible, socially responsible genomics‐based analytical eDNA tools for effective decision‐making by publishing 125 quantitative real‐time polymerase chain reaction (qPCR) primer/probe sets designed to detect key invertebrates, fish, amphibians, birds, reptiles, and mammals in coastal and inland ecosystems important to North America, with an emphasis on Canada. These 125 assays were designed to meet or exceed the new Canadian Standards Association (CSA) consensus‐based and multi‐stakeholder national standards for eDNA (CSA W214:21 and CSA W219:23). Herein, we describe how we applied eDNA assay design and validation approaches across a wide range of animal taxa to achieve compliance.

Environmental DNAVol. 7(3)
University of Victoria (CA), Institut National de la Recherche Scientifique (CA), Canada's Michael Smith Genome Sciences Centre (CA)
Genome Canada, Genome British Columbia, Canada Research Chairs, Liber Ero Foundation, Natural Sciences and Engineering Research Council of Canada
Openalex Percentile: Top 1%
Environmental DNA in Biodiversity Studies
18.88
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.